Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14c12
(793 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ106402-1|AAZ99231.1| 334|Homo sapiens G-protein-coupled recep... 31 6.3
DQ106401-1|AAZ99230.1| 381|Homo sapiens G-protein-coupled recep... 31 6.3
DQ106398-1|AAZ99227.1| 381|Homo sapiens G-protein-coupled recep... 31 6.3
BC020678-1|AAH20678.1| 381|Homo sapiens G protein-coupled recep... 31 6.3
AL627402-7|CAH71242.1| 381|Homo sapiens G protein-coupled recep... 31 6.3
AK027780-1|BAB55362.1| 381|Homo sapiens protein ( Homo sapiens ... 31 6.3
AF118670-1|AAD17248.1| 381|Homo sapiens orphan G protein-couple... 31 6.3
AF039686-1|AAD50531.1| 381|Homo sapiens G-protein coupled recep... 31 6.3
BC058905-1|AAH58905.1| 584|Homo sapiens ligatin protein. 30 8.3
BC039134-1|AAH39134.2| 584|Homo sapiens ligatin protein. 30 8.3
BC001585-1|AAH01585.1| 584|Homo sapiens ligatin protein. 30 8.3
AL591846-3|CAI13535.1| 271|Homo sapiens ligatin protein. 30 8.3
AL591846-2|CAI13534.1| 584|Homo sapiens ligatin protein. 30 8.3
AK001852-1|BAA91942.1| 584|Homo sapiens protein ( Homo sapiens ... 30 8.3
AF220417-1|AAF34185.2| 584|Homo sapiens hepatocellular carcinom... 30 8.3
>DQ106402-1|AAZ99231.1| 334|Homo sapiens G-protein-coupled receptor
34 splice variant protein.
Length = 334
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -3
Query: 317 FHFGCNKFNIHLITTKVNGNFDILVSFV*IIHYVTISLNKYIKLGHNL 174
+H NK+ + +I KV G + ++ II ISL++YIK+ ++
Sbjct: 66 YHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSI 113
>DQ106401-1|AAZ99230.1| 381|Homo sapiens G-protein-coupled receptor
34 protein.
Length = 381
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -3
Query: 317 FHFGCNKFNIHLITTKVNGNFDILVSFV*IIHYVTISLNKYIKLGHNL 174
+H NK+ + +I KV G + ++ II ISL++YIK+ ++
Sbjct: 113 YHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSI 160
>DQ106398-1|AAZ99227.1| 381|Homo sapiens G-protein-coupled receptor
34 protein.
Length = 381
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -3
Query: 317 FHFGCNKFNIHLITTKVNGNFDILVSFV*IIHYVTISLNKYIKLGHNL 174
+H NK+ + +I KV G + ++ II ISL++YIK+ ++
Sbjct: 113 YHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSI 160
>BC020678-1|AAH20678.1| 381|Homo sapiens G protein-coupled receptor
34 protein.
Length = 381
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -3
Query: 317 FHFGCNKFNIHLITTKVNGNFDILVSFV*IIHYVTISLNKYIKLGHNL 174
+H NK+ + +I KV G + ++ II ISL++YIK+ ++
Sbjct: 113 YHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSI 160
>AL627402-7|CAH71242.1| 381|Homo sapiens G protein-coupled receptor
34 protein.
Length = 381
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -3
Query: 317 FHFGCNKFNIHLITTKVNGNFDILVSFV*IIHYVTISLNKYIKLGHNL 174
+H NK+ + +I KV G + ++ II ISL++YIK+ ++
Sbjct: 113 YHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSI 160
>AK027780-1|BAB55362.1| 381|Homo sapiens protein ( Homo sapiens
cDNA FLJ14874 fis, clone PLACE1002722, weakly similar to
PROBABLE G PROTEIN-COUPLED RECEPTOR KIAA0001. ).
Length = 381
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -3
Query: 317 FHFGCNKFNIHLITTKVNGNFDILVSFV*IIHYVTISLNKYIKLGHNL 174
+H NK+ + +I KV G + ++ II ISL++YIK+ ++
Sbjct: 113 YHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSI 160
>AF118670-1|AAD17248.1| 381|Homo sapiens orphan G protein-coupled
receptor protein.
Length = 381
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -3
Query: 317 FHFGCNKFNIHLITTKVNGNFDILVSFV*IIHYVTISLNKYIKLGHNL 174
+H NK+ + +I KV G + ++ II ISL++YIK+ ++
Sbjct: 113 YHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSI 160
>AF039686-1|AAD50531.1| 381|Homo sapiens G-protein coupled receptor
GPR34 protein.
Length = 381
Score = 30.7 bits (66), Expect = 6.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -3
Query: 317 FHFGCNKFNIHLITTKVNGNFDILVSFV*IIHYVTISLNKYIKLGHNL 174
+H NK+ + +I KV G + ++ II ISL++YIK+ ++
Sbjct: 113 YHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSI 160
>BC058905-1|AAH58905.1| 584|Homo sapiens ligatin protein.
Length = 584
Score = 30.3 bits (65), Expect = 8.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 710 LSVIGRLVRFSVGVKDDPKAYSQLLSLIANGGYNVVHQFQDRIWVEGS 567
+S++G ++GV A L S + G++V+H +QD +W G+
Sbjct: 135 ISLVGNRAPVAIGVAAMSTA-EMLTSGLKGRGFSVLHTYQDHLWRSGN 181
>BC039134-1|AAH39134.2| 584|Homo sapiens ligatin protein.
Length = 584
Score = 30.3 bits (65), Expect = 8.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 710 LSVIGRLVRFSVGVKDDPKAYSQLLSLIANGGYNVVHQFQDRIWVEGS 567
+S++G ++GV A L S + G++V+H +QD +W G+
Sbjct: 135 ISLVGNRAPVAIGVAAMSTA-EMLTSGLKGRGFSVLHTYQDHLWRSGN 181
>BC001585-1|AAH01585.1| 584|Homo sapiens ligatin protein.
Length = 584
Score = 30.3 bits (65), Expect = 8.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 710 LSVIGRLVRFSVGVKDDPKAYSQLLSLIANGGYNVVHQFQDRIWVEGS 567
+S++G ++GV A L S + G++V+H +QD +W G+
Sbjct: 135 ISLVGNRAPVAIGVAAMSTA-EMLTSGLKGRGFSVLHTYQDHLWRSGN 181
>AL591846-3|CAI13535.1| 271|Homo sapiens ligatin protein.
Length = 271
Score = 30.3 bits (65), Expect = 8.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 710 LSVIGRLVRFSVGVKDDPKAYSQLLSLIANGGYNVVHQFQDRIWVEGS 567
+S++G ++GV A L S + G++V+H +QD +W G+
Sbjct: 107 ISLVGNRAPVAIGVAAMSTA-EMLTSGLKGRGFSVLHTYQDHLWRSGN 153
>AL591846-2|CAI13534.1| 584|Homo sapiens ligatin protein.
Length = 584
Score = 30.3 bits (65), Expect = 8.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 710 LSVIGRLVRFSVGVKDDPKAYSQLLSLIANGGYNVVHQFQDRIWVEGS 567
+S++G ++GV A L S + G++V+H +QD +W G+
Sbjct: 135 ISLVGNRAPVAIGVAAMSTA-EMLTSGLKGRGFSVLHTYQDHLWRSGN 181
>AK001852-1|BAA91942.1| 584|Homo sapiens protein ( Homo sapiens
cDNA FLJ10990 fis, clone PLACE1002046, highly similar to
LIGATIN. ).
Length = 584
Score = 30.3 bits (65), Expect = 8.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 710 LSVIGRLVRFSVGVKDDPKAYSQLLSLIANGGYNVVHQFQDRIWVEGS 567
+S++G ++GV A L S + G++V+H +QD +W G+
Sbjct: 135 ISLVGNRAPVAIGVAAMSTA-EMLTSGLKGRGFSVLHTYQDHLWRSGN 181
>AF220417-1|AAF34185.2| 584|Homo sapiens hepatocellular
carcinoma-associated antigen 56 protein.
Length = 584
Score = 30.3 bits (65), Expect = 8.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 710 LSVIGRLVRFSVGVKDDPKAYSQLLSLIANGGYNVVHQFQDRIWVEGS 567
+S++G ++GV A L S + G++V+H +QD +W G+
Sbjct: 135 ISLVGNRAPVAIGVAAMSTA-EMLTSGLKGRGFSVLHTYQDHLWRSGN 181
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,484,446
Number of Sequences: 237096
Number of extensions: 1606009
Number of successful extensions: 2530
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2530
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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