Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14c12
         (793 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052059-1|AAK93483.1|  469|Drosophila melanogaster LP08712p pro...    89   5e-18
AE014297-917|AAF54365.1|  316|Drosophila melanogaster CG8129-PA,...    89   5e-18
AE014297-916|AAF54364.1|  469|Drosophila melanogaster CG8129-PB,...    89   5e-18
AY118343-1|AAM48372.1|  488|Drosophila melanogaster LD46760p pro...    29   9.6  
AE014298-1175|AAF46371.2|  488|Drosophila melanogaster CG1440-PA...    29   9.6  

>AY052059-1|AAK93483.1|  469|Drosophila melanogaster LP08712p
           protein.
          Length = 469

 Score = 89.4 bits (212), Expect = 5e-18
 Identities = 44/104 (42%), Positives = 66/104 (63%)
 Frame = -3

Query: 791 LKTKYVVAILSGGNIDYTSLIRSLQRGLSVIGRLVRFSVGVKDDPKAYSQLLSLIANGGY 612
           LK K VV +L GGNID T   R L+RGL+ +GRLV+F+V V D P   + L +L+   G 
Sbjct: 349 LKGKKVVVLLCGGNIDTTVFGRCLERGLAAVGRLVKFNVEVSDRPGGINDLCALLVRVGV 408

Query: 611 NVVHQFQDRIWVEGSDYTIEIKLVCETRNLEHALELKRIIERAY 480
           ++     +R W+    YT+E+K+VCET +  H+L+LK  +++ Y
Sbjct: 409 SIKDIMHERAWLR-DVYTVEVKVVCETVDWTHSLQLKNELKKFY 451


>AE014297-917|AAF54365.1|  316|Drosophila melanogaster CG8129-PA,
           isoform A protein.
          Length = 316

 Score = 89.4 bits (212), Expect = 5e-18
 Identities = 44/104 (42%), Positives = 66/104 (63%)
 Frame = -3

Query: 791 LKTKYVVAILSGGNIDYTSLIRSLQRGLSVIGRLVRFSVGVKDDPKAYSQLLSLIANGGY 612
           LK K VV +L GGNID T   R L+RGL+ +GRLV+F+V V D P   + L +L+   G 
Sbjct: 196 LKGKKVVVLLCGGNIDTTVFGRCLERGLAAVGRLVKFNVEVSDRPGGINDLCALLVRVGV 255

Query: 611 NVVHQFQDRIWVEGSDYTIEIKLVCETRNLEHALELKRIIERAY 480
           ++     +R W+    YT+E+K+VCET +  H+L+LK  +++ Y
Sbjct: 256 SIKDIMHERAWLR-DVYTVEVKVVCETVDWTHSLQLKNELKKFY 298


>AE014297-916|AAF54364.1|  469|Drosophila melanogaster CG8129-PB,
           isoform B protein.
          Length = 469

 Score = 89.4 bits (212), Expect = 5e-18
 Identities = 44/104 (42%), Positives = 66/104 (63%)
 Frame = -3

Query: 791 LKTKYVVAILSGGNIDYTSLIRSLQRGLSVIGRLVRFSVGVKDDPKAYSQLLSLIANGGY 612
           LK K VV +L GGNID T   R L+RGL+ +GRLV+F+V V D P   + L +L+   G 
Sbjct: 349 LKGKKVVVLLCGGNIDTTVFGRCLERGLAAVGRLVKFNVEVSDRPGGINDLCALLVRVGV 408

Query: 611 NVVHQFQDRIWVEGSDYTIEIKLVCETRNLEHALELKRIIERAY 480
           ++     +R W+    YT+E+K+VCET +  H+L+LK  +++ Y
Sbjct: 409 SIKDIMHERAWLR-DVYTVEVKVVCETVDWTHSLQLKNELKKFY 451


>AY118343-1|AAM48372.1|  488|Drosophila melanogaster LD46760p
           protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = -3

Query: 752 NIDYTSLIRSLQRGLSVIGRLVRF-SVGVKDDPKAYSQLLSLIANGGYNVVHQFQDRIWV 576
           N    +++++ QRG  V GRLV F  +    D   +  L++LI   G      F +    
Sbjct: 146 NYFLNNVVKTAQRGEKVDGRLVSFLLLDPTSDGGQWDMLVNLITKHGLMPKKCFPESFSC 205

Query: 575 EGSDYTIEIKLVCETRNLEHALELKRIIER 486
           E S   + +  + +++  E+A  L+ ++E+
Sbjct: 206 ESS---LRMNAILKSKLREYARNLRVLMEK 232


>AE014298-1175|AAF46371.2|  488|Drosophila melanogaster CG1440-PA
           protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = -3

Query: 752 NIDYTSLIRSLQRGLSVIGRLVRF-SVGVKDDPKAYSQLLSLIANGGYNVVHQFQDRIWV 576
           N    +++++ QRG  V GRLV F  +    D   +  L++LI   G      F +    
Sbjct: 146 NYFLNNVVKTAQRGEKVDGRLVSFLLLDPTSDGGQWDMLVNLITKHGLMPKKCFPESFSC 205

Query: 575 EGSDYTIEIKLVCETRNLEHALELKRIIER 486
           E S   + +  + +++  E+A  L+ ++E+
Sbjct: 206 ESS---LRMNAILKSKLREYARNLRVLMEK 232


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,237,206
Number of Sequences: 53049
Number of extensions: 517477
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3675273108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)