Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14c12
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical pr...    92   4e-19
AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical ...    77   1e-14
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    30   1.7  

>Z49068-1|CAA88854.2|  499|Caenorhabditis elegans Hypothetical
           protein K01C8.1 protein.
          Length = 499

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 46/104 (44%), Positives = 68/104 (65%)
 Frame = -3

Query: 791 LKTKYVVAILSGGNIDYTSLIRSLQRGLSVIGRLVRFSVGVKDDPKAYSQLLSLIANGGY 612
           LK K VV+ILSGGNID T L RS++RGL+V GRLVR  V V D P   ++L + IA+ G 
Sbjct: 390 LKGKKVVSILSGGNIDTTVLGRSIERGLAVDGRLVRLEVVVSDRPGGIAELTTTIAHLGA 449

Query: 611 NVVHQFQDRIWVEGSDYTIEIKLVCETRNLEHALELKRIIERAY 480
           ++   F +R W+    + +++K+V ETR  EH  E++  +++ Y
Sbjct: 450 SIKDIFHERAWISTDVFHVKVKVVAETRGKEHVEEIETALKKIY 493


>AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.9 protein.
          Length = 448

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
 Frame = -3

Query: 791 LKTKYVVAILSGGNIDYTSLIRSLQRGLSVIGRLVRFSVGVKDDPKAYSQLLSLIANGGY 612
           LK K VV+ILSGGNID TSL R ++RGL+   R++R SV + D P   S+L  L+     
Sbjct: 330 LKGKTVVSILSGGNIDSTSLGRCIERGLAYDHRVIRLSVIIPDKPGGLSKLTGLVGELSG 389

Query: 611 NVVHQFQDRIWVEGSDYTIEIKLVCETRNLEHALELKRIIERAY-PYSSEFE 459
           NV   + +R ++     +  +K+V E R  EH ++LK+  +  Y P + +F+
Sbjct: 390 NVRDLYLERAFMRNDMSSQRVKMVIEVRGEEHEMQLKQKFQEVYDPSNCQFK 441


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 42  KELKCNLDKSVVVMFKKINKNV 107
           KELKC LDK VV  F K N +V
Sbjct: 295 KELKCELDKGVVPDFHKYNTHV 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,067,041
Number of Sequences: 27780
Number of extensions: 291024
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)