Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14c12
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              25   1.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   1.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.7  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 177 IMSKFNVFVKANRYIMYNLHK 239
           ++ KFNV  K N  I YNL K
Sbjct: 75  VLEKFNVMDKKNGKIRYNLLK 95


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 614 YNVVHQFQDRIWVEGSDYTIEIKLVCETRNLEHALELKRIIER 486
           Y +     DR+WV  S     I+L+C  + L   L   +++++
Sbjct: 129 YKIAIDKFDRLWVLDSGLINNIQLMCSPKLLAFDLNTSKLLKQ 171


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 257 FDILVSFV*IIHYVTISLNKYIKLGHNLCISRF 159
           FD++ S   I++   ISL++YI +   L   R+
Sbjct: 104 FDVMCSTASILNLCAISLDRYIHIKDPLRYGRW 136


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -3

Query: 641 LLSLIANGGYN---VVHQFQDRIWVEGSDYTIEIKLVCETRNLE 519
           L +LIA G Y     +H F   + + G+  ++E+KL  +   L+
Sbjct: 330 LNALIATGLYINDLSMHDFSRDLMLAGTQQSVELKLALDQEQLK 373


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = -3

Query: 614 YNVVHQFQDRIWVEGSDYTIEIKLVCETRNLEHALELKRIIER 486
           Y +     DR+WV  S     ++ VC  + L   L   +++++
Sbjct: 123 YKIEIDMCDRLWVLDSGLINNVRSVCPPQLLVFDLNTSQLLKQ 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,147
Number of Sequences: 438
Number of extensions: 4046
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)