Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14c10
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 31 0.16
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 30 0.28
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 29 0.48
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.48
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.64
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.84
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 29 0.84
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.1
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 28 1.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.5
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 2.6
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 27 2.6
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.4
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 4.5
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 26 4.5
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 5.9
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -1
Query: 243 MELMQDENNRIREEIEALRSKYDALK 166
M+L+ DEN R+RE+I LRS+ L+
Sbjct: 612 MKLIMDENQRLREQIAVLRSRIQHLE 637
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 30.3 bits (65), Expect = 0.28
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -1
Query: 354 KQRRRTLKNRGYAASCRIKRIEQKDELENEKS-QEWHDMELMQDENNRIREEIEALRS 184
KQ +NR A CRIK+ + L+++ + + EL+Q N+ +REEI LR+
Sbjct: 123 KQSMLKARNRQAAQKCRIKKKKYLQTLQDQVNYYTSENKELLQSAND-LREEIIKLRT 179
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 29.5 bits (63), Expect = 0.48
Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 1/145 (0%)
Frame = -1
Query: 573 TKRVTHNQRIDDSKINMPHDLKELGGRKAINMAPLSPTPCAEI-SDDELVSISVRDLNRQ 397
T+ V+ ++ + S IN L R +P SP + S ++ R
Sbjct: 393 TRSVSDHRILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTLS 452
Query: 396 LKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWHDMELMQDENN 217
+ + D + + YAAS +++ I + E + +E + ++ + E++
Sbjct: 453 VNKKQFNADDGSTLNSPNSIRETEEYAASPKLEDIADEVETDATSQRELLERQIQKAESS 512
Query: 216 RIREEIEALRSKYDALKRFATMKSI 142
EIE+L+ K + +T + I
Sbjct: 513 EDTSEIESLQGKLSLPQVSSTQQEI 537
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.48
Identities = 36/181 (19%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Frame = -1
Query: 570 KRVTHNQRIDDSKINMPHDLKELGGRKAINMAPLSPTPCAEISDDELVSISVRDLNR--- 400
+++ H +SK++ +LKE+ G+ ++++ L + ISD++ + + +L++
Sbjct: 839 QKLMHKHVNQESKVS---ELKEVNGKLSLDLKNLRSSLNVAISDNDQILTQLAELSKNYD 895
Query: 399 QLKMRGLTRDQ-IVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQE-WHDMELMQD 226
L+ + + ++ ++ L R+ ++ K ++E KS + + Q+
Sbjct: 896 SLEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQE 955
Query: 225 ENNRIREE-------IEALRSKYDALKRFATMKSIPLPAELDILP*TIFNWELGLKLLLY 67
E + ++EE I +++SK D KS L A+++ L + E+ LL
Sbjct: 956 EISNLKEENMSQSQAITSVKSKLDE----TLSKSSKLEADIEHLKNKVSEVEVERNALLA 1011
Query: 66 S 64
S
Sbjct: 1012 S 1012
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 0.64
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Frame = -1
Query: 405 NRQLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWHDMELMQD 226
N Q K+ + D+I+ + T + G A+ + ++Q + + + W D+ + +
Sbjct: 876 NNQKKLEDMNLDEILEHAEDHDTSNDVGGASMGGEEFLKQFEVTDYKADVSWDDIIPLTE 935
Query: 225 -----ENNRIREEIEALRSKYDALKR 163
E +R+REE EAL+ + + R
Sbjct: 936 REKFEEEDRLREEEEALKQEIELSSR 961
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 28.7 bits (61), Expect = 0.84
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -1
Query: 444 SDDELVSISVRDLNR-QLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELEN 268
S E++ R L + ++++R L R++ K+R + + + I +K ELE
Sbjct: 411 SQPEVLDNLERKLRQLRVEIRALEREKDEASKERLKAARKEAEQVEEETRPIREKYELEK 470
Query: 267 EKSQEWHDMELMQDENNRIREEIE 196
+ E D + DE E+ E
Sbjct: 471 SRGSELQDAKRRLDELKAKAEDAE 494
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 28.7 bits (61), Expect = 0.84
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = -2
Query: 146 AFLCRQNWIYYRELYL 99
A+LCR+NW+Y + +Y+
Sbjct: 455 AWLCRRNWVYEQNIYM 470
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 291 EQKDELENEKSQEWHDMELMQDENNRIREEIE 196
E K+E + EK + D E +ENN + E+I+
Sbjct: 4115 ENKEEADAEKDEPMQDFEDPLEENNTLDEDIQ 4146
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Frame = -1
Query: 483 NMAPLSPTPCAE--ISDDELVSISVRDLN-------RQLKMRGLTRDQIVRMKQRRRTLK 331
N P P P E + + + I +R L QLK RG TR+QI + R+
Sbjct: 380 NFLPSGPVPANEPMLKRESVDLIKIRQLAILFQQRASQLKARGATREQITEILNRQAIAA 439
Query: 330 NRGYAASCRIKRIEQKDELENEKSQEWHDME 238
A + R +L+ + Q+ M+
Sbjct: 440 GTDLATVMTVARNLHFQQLQMRQQQQQQQMK 470
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/87 (18%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = -1
Query: 426 SISVRDLNRQLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWH 247
++ + + ++K +DQ+V + +N + +I +EQ+ + N +++E
Sbjct: 34 AVFISAIKTKVKDINALKDQLVLQEVNHEHKEN---VLTKKINFLEQQLQSSNNQAEESR 90
Query: 246 DM-ELMQDENNRIREEIEALRSKYDAL 169
++ ++++EN ++ +E ++DAL
Sbjct: 91 NLISVLRNENESLKTNLENQNKRFDAL 117
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = -1
Query: 420 SVRDLNRQLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWHDM 241
++ +LN + ++I + + + + Y R ++ +ELE++ S +
Sbjct: 821 AITELNEEFATSSEVDNKISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSV 880
Query: 240 ELMQDENNRIREE 202
E +QDE N I+E+
Sbjct: 881 EELQDEMNSIKED 893
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 450 EISDDELVSISVRDLNRQLKMRGLTRDQIVRMKQRRRTLKNR 325
E SDDE + IS++D +R K+R + +V Q R L+ +
Sbjct: 102 EDSDDERLMISLQDHSRLRKLRQYEDEDMVNGLQYARRLRTQ 143
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 400 ATQNARPHSRSDCKNETTSPDSKKQRLCRLVPYQAY 293
ATQ A PH+ +++ S S + + +PYQ Y
Sbjct: 542 ATQAAMPHTMGPSAHDSASAPSPHMQSQQALPYQYY 577
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -1
Query: 333 KNRGYAASCRIKRIEQKDELENEKSQEWHDMELMQDENNRIREEIEALRSKYDALKRFAT 154
+NR A CR ++ + L+ + ++ E++ + + +REEI +L++ A K
Sbjct: 481 RNRQAALKCRQRKKQWLSNLQAKVEFYGNENEILSAQVSALREEIVSLKTLLIAHKDCPV 540
Query: 153 MKS 145
KS
Sbjct: 541 AKS 543
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -1
Query: 357 MKQRRRTLKNRGYAASCRIKRIEQKDELENEKSQEWHDMELMQDENNRIREEIEALRSK 181
MK+RR +NR A+ CR K+ LE + ++ +++REE+ L+++
Sbjct: 268 MKRRRFLERNRIAASKCRQKKKLWTQNLEKTAHIACEQSKALRILVSQLREEVICLKNQ 326
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 180 ICFSTLQSLPLFYYFRPASVPYRAIPDFSRSRVHLSVL 293
+C + LP FY +P S IP FS+S +H V+
Sbjct: 1125 VCILLYKGLPPFYRQKPGS-----IPAFSKSLLHRKVV 1157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,394
Number of Sequences: 5004
Number of extensions: 51227
Number of successful extensions: 189
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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