Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14c07
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   1.8  
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    26   5.4  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   7.1  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    25   9.4  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   9.4  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   9.4  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/51 (21%), Positives = 29/51 (56%)
 Frame = +2

Query: 515  TIVNNFSCCYYSTHRSVKKKINNFYLWRKT*ILL*NITRLWYFMLPLYPAF 667
            +I+N+     Y    ++ +++N+F+  +K  + +  + ++WY ++ L P F
Sbjct: 876  SILNHILFHVYKKKYALWEQVNSFFDLQKKELSILEMEKIWYVIMTLNPVF 926


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = -3

Query: 464 FYERMHNFGLGQRIIPTFD-SRYA-FPEPIPI-KKSVIENLN----AAYQNMYQGLRQTN 306
           F  R  +FG+GQ I P  D SR+  +PE I + ++  I NL      A     + L +  
Sbjct: 27  FVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNT 86

Query: 305 DTRVYKKRFDYSPKEVGQ 252
            T+V+K    Y P+   +
Sbjct: 87  ATQVFKLLNKYRPETAAE 104


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 571 KDQQFLFMAKNMNSIVKYYASVVFYAATIPCILIYVFYNRTP 696
           KD+  +    +    VKY  S V  +   P +  Y FY RTP
Sbjct: 377 KDRDKIVNMVSHEQWVKYLRSDVLASYRQPLVQKYTFYTRTP 418


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 639 YHRRVIFYNRIHVFRHK*KLLIFFFTLRCVE 547
           +HRR I + R   F HK +++    +L   E
Sbjct: 503 FHRRTIIFFRSKAFAHKMRVIFGLLSLNATE 533


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = -3

Query: 440 GLGQRIIPTFDSRYAFPEPIPIKKS----VIENLNAAYQNMYQGLRQTNDTRVYKKRFDY 273
           GL  +  PTF+   A   P P+K S     +   NA     ++    + DT   K +F  
Sbjct: 389 GLLTKSAPTFEELQASITPKPVKTSPNDTALTLANAEDNKTFEHQPLSKDTEAPKSQFSS 448

Query: 272 SP 267
           SP
Sbjct: 449 SP 450


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 392 EKRNDYRKSG*CADLIQNYASSHKKKFDLN 481
           +KRN  +K     DLIQN A+SH K  +L+
Sbjct: 151 KKRNALKKEQ--EDLIQNSATSHSKSDNLD 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,913
Number of Sequences: 5004
Number of extensions: 69671
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)