Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14c07
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0456 - 17362080-17364156,17364853-17364942,17372615-173733...    29   5.6  
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266...    28   9.7  
12_01_0624 - 5137096-5137310,5137923-5138380,5138428-5140070,514...    28   9.7  
06_01_0321 + 2328932-2328963,2329084-2329243,2329388-2329576,233...    28   9.7  

>08_02_0456 -
           17362080-17364156,17364853-17364942,17372615-17373318,
           17373421-17373451,17374366-17374448,17374517-17374640,
           17376427-17376560
          Length = 1080

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 292 TKKGLITRL-KK*DSMSSLKRYLIA*SRIWQLKQWKVYQ*WCA-EVSVTGT 146
           T+ G I +L +K  +    KRYLI    +W ++ WK+ +  CA   S+TG+
Sbjct: 369 TESGDIQQLIRKITTSLKNKRYLIVIDDLWNIESWKIIR--CAFSRSITGS 417


>12_02_0585 +
           20824752-20825954,20826141-20826329,20826533-20826690,
           20826913-20827009,20827368-20827730,20829225-20829303,
           20830180-20830286
          Length = 731

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 138 NHEVPVTDTSAHHYWYTFHCFNCQMRDYAIKYLFKEDMLSYFFRRVIK 281
           +H VP  D +    W+  HC      D  +K  F E+ +      +IK
Sbjct: 366 SHGVPDKDNNGAAAWFLQHCAAANRLDVVLKMEFDEEKMEEDIEDLIK 413


>12_01_0624 -
           5137096-5137310,5137923-5138380,5138428-5140070,
           5140245-5140462,5140589-5140757,5141249-5141305
          Length = 919

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 684 IKHVNQNAGYSGSIKYHRR-VIFYNR 610
           I H+ Q +GY+G ++  RR  +FY R
Sbjct: 807 ISHIQQISGYAGEMRIRRRWYVFYTR 832


>06_01_0321 +
           2328932-2328963,2329084-2329243,2329388-2329576,
           2330406-2330517,2331395-2331474,2332022-2332132,
           2332580-2332666,2332979-2333260,2333804-2333965
          Length = 404

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = -3

Query: 422 IPTFDSRYAFPEPIPIKKSVIENLNAAYQNMYQGLRQTNDTRVYKKRFDYSPKEVGQ 252
           I   +S+   PEP  +K    E +    Q+  + L+Q ND +   +++ + P  + +
Sbjct: 219 ISWLESQEEKPEPNELKAIAAEGVITCLQDAIESLKQGNDVKGVAEQWSFVPHVINE 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,034,597
Number of Sequences: 37544
Number of extensions: 369816
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)