Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14c07
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z71180-1|CAA94891.1|  267|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
 Frame = -1

Query: 193 WKVYQ*WCAEVSVTGTSWLLSKQSLGNGLMEASERIV----------KKNTTFHNEIKSX 44
           WK+++  C E S+T  ++L + +  GN   +A  RI           KK   FH  +   
Sbjct: 271 WKIFRKKCRENSITPPNFLTTARYYGNLFFQADRRIFNFLEPQPTLHKKVLYFHEALARY 330

Query: 43  LDKKANSRLI*KPQ 2
           L K    R +  PQ
Sbjct: 331 LAKNGKGRKMEAPQ 344


>Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
 Frame = -1

Query: 193 WKVYQ*WCAEVSVTGTSWLLSKQSLGNGLMEASERIV----------KKNTTFHNEIKSX 44
           WK+++  C E S+T  ++L + +  GN   +A  RI           KK   FH  +   
Sbjct: 271 WKIFRKKCRENSITPPNFLTTARYYGNLFFQADRRIFNFLEPQPTLHKKVLYFHEALARY 330

Query: 43  LDKKANSRLI*KPQ 2
           L K    R +  PQ
Sbjct: 331 LAKNGKGRKMEAPQ 344


>Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical
           protein ZC506.4b protein.
          Length = 954

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 598 KNMNSIVKYYASVVFYAATIPCILIYVFYNRTPTI 702
           ++M S+V    +V    AT+  I++YV YN TP +
Sbjct: 633 RSMYSLVPTILAVFGIIATLFVIVVYVIYNETPVV 667


>Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical
           protein ZC506.4a protein.
          Length = 999

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 598 KNMNSIVKYYASVVFYAATIPCILIYVFYNRTPTI 702
           ++M S+V    +V    AT+  I++YV YN TP +
Sbjct: 678 RSMYSLVPTILAVFGIIATLFVIVVYVIYNETPVV 712


>Z71180-1|CAA94891.1|  267|Caenorhabditis elegans Hypothetical
           protein F22E12.3 protein.
          Length = 267

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 102 SIKPFPRLCFDNNHEVPVTDTSAHHYW 182
           S+K  P LC D N  +P+ +   H YW
Sbjct: 231 SMKNAPALCSDTNRMIPIVN-GTHLYW 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,877,627
Number of Sequences: 27780
Number of extensions: 385764
Number of successful extensions: 905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)