Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14c07
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   5.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   5.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   5.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   7.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   7.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.9  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 615 CKILRVCGILCC 650
           CK+   C +LCC
Sbjct: 109 CKLWLTCDVLCC 120


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 615 CKILRVCGILCC 650
           CK+   C +LCC
Sbjct: 109 CKLWLTCDVLCC 120


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 711 WLDDRRRTVIKHVNQNAG 658
           W  D  +  +KH+NQN G
Sbjct: 166 WTYDGIQIDLKHINQNMG 183


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 615 CKILRVCGILCC 650
           CK+   C +LCC
Sbjct: 109 CKLWLTCDVLCC 120


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 469 LFFMRGCIILD*VSASSRLSIVVT 398
           L+F+RGC+    ++AS+ L+ V T
Sbjct: 283 LYFIRGCLQTYLINASTYLNEVHT 306


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 469 LFFMRGCIILD*VSASSRLSIVVT 398
           L+F+RGC+    ++AS+ L+ V T
Sbjct: 321 LYFIRGCLQTYLINASTYLNEVHT 344


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 165 SAHHYWYTFHCFNCQMRD 218
           S ++YW T +C N   RD
Sbjct: 100 SCNNYWNTKNCVNPYDRD 117


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 94  ERIVKKNTTFHNEIKSXLD 38
           +R+ K+NT F N+++   D
Sbjct: 458 KRLTKQNTAFENQLQFVSD 476



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/14 (57%), Positives = 11/14 (78%), Gaps = 3/14 (21%)
 Frame = +3

Query: 189 FHCFNC---QMRDY 221
           +HCFNC   Q+RD+
Sbjct: 607 WHCFNCTQYQIRDH 620


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,200
Number of Sequences: 438
Number of extensions: 5188
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)