Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14c02
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 288 6e-79
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 122 6e-29
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 82 1e-16
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 65 1e-11
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 53 4e-08
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 46 7e-06
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 39 0.001
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 34 0.029
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 33 0.050
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 33 0.067
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.5
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 2.5
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 288 bits (707), Expect = 6e-79
Identities = 137/244 (56%), Positives = 172/244 (70%)
Frame = -1
Query: 813 GFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQK 634
GF FE +QRN L +KGFP PKAT TGTTIVG+I D ++LGADTRAT +++DKNC+K
Sbjct: 9 GFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKK 68
Query: 633 IHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH 454
+H ++ N++C GAGTAADTE T ++S +EL L+T R V TA T+LK+ LFRYQGH
Sbjct: 69 LHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGH 128
Query: 453 IGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKK 274
IGA LVLGG D GPH++ I HGS DKLPY +GSGSLAA++V E ++ D+ E +
Sbjct: 129 IGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAME 188
Query: 273 LVRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYRYALGTTAVL 94
LV++AI AGIFNDLGSGSN DL VI Y R Y + N + KQ Y Y GTTAVL
Sbjct: 189 LVKEAIEAGIFNDLGSGSNCDLVVIDEEKATPY-RGYSKPNERATKQSKYTYDRGTTAVL 247
Query: 93 KQRV 82
K+ +
Sbjct: 248 KEDI 251
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 122 bits (294), Expect = 6e-29
Identities = 63/198 (31%), Positives = 105/198 (53%), Gaps = 1/198 (0%)
Frame = -1
Query: 741 KTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQ 562
+ GTTI + Y DGVIL AD+R T ++++ K+ L N++CC +G+AADT+
Sbjct: 22 RMGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVAD 81
Query: 561 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVD-RTGPHIYCIYPH 385
+ L + R+ G V TAATL M ++ + + A L++ G D +TG +Y I
Sbjct: 82 LLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLG 141
Query: 384 GSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLC 205
GS+ K P A GSGS +A ++ +M +EE + +++A+A + D SG + +
Sbjct: 142 GSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMV 201
Query: 204 VIRNTGPAQYLRTYEEAN 151
++ G + + AN
Sbjct: 202 ILNKDGMERKFFAIDTAN 219
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 81.8 bits (193), Expect = 1e-16
Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 3/216 (1%)
Frame = -1
Query: 825 IPVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDK 646
+PVP S + RN K GTT + Y G+++ D+RA+ +++ +
Sbjct: 33 VPVPQSSL--YLRNLTDETKNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIASQ 90
Query: 645 NCQKIHYLASNMYCCG--AGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRML 472
+K+ + N Y G AG AAD + + + L +L + V A+ +L +
Sbjct: 91 TVKKV--IEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNIT 148
Query: 471 FRYQGH-IGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDM 295
+ Y+G+ + +L G + G +Y I G+ K ++GSGS A V ++G++ D+
Sbjct: 149 YSYKGYGLSMGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDL 208
Query: 294 NEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTG 187
+++E L + +I A D SG +V+L I G
Sbjct: 209 SKQEALYLAQRSIVAATHRDAYSGGSVNLYHIDENG 244
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 65.3 bits (152), Expect = 1e-11
Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 11/219 (5%)
Frame = -1
Query: 756 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 577
A +A K G+T +G+ D V+LG + R T + ++ + +K+ + S++ C +G AD
Sbjct: 27 AIEAIKLGSTAIGVKTKDAVVLGVEKRLT-SPLMESHSVEKLFEIDSHIGCAISGLTADA 85
Query: 576 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-QGH----------IGAALVLG 430
+ Q + R +E+ + + R+ +G G AL++
Sbjct: 86 RTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIA 145
Query: 429 GVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAA 250
G+D GP +Y P G+ + +GSGS A + + +DM EE + L+ +
Sbjct: 146 GIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQ 205
Query: 249 GIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQ 133
+ L S NV L + G E A+ ++Q
Sbjct: 206 VMEEKLDS-KNVQLAKVTAEGGFHIYNDEEMADAVAREQ 243
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 53.2 bits (122), Expect = 4e-08
Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Frame = -1
Query: 723 VGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQL 544
+GI+ DG++L A+ + T + +++ +K++++ NM C AG AD + + A ++
Sbjct: 35 LGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILI-NYARRV 93
Query: 543 ELQRLHT-GRTVPVETAATL---LKRMLFRYQG--HIGAALVLGGVDR-TGPHIYCIYPH 385
Q L T +P E LK+ +Y G G + + G D G ++ P
Sbjct: 94 GQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPS 153
Query: 384 GSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 271
G+ ++G S + ++ +K D+N +E +
Sbjct: 154 GNYGSWQANSIGGNSTSVQSLMRQEYKDDINLDEASAM 191
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 46.0 bits (104), Expect = 7e-06
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 8/212 (3%)
Frame = -1
Query: 810 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI 631
FS F N L Q + A A G T VGI DGV+L + + T + + +K+
Sbjct: 7 FSLTTFSPNGKLVQIEY-ALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIG-ASLEKV 64
Query: 630 HYLASNMYCCGAGTAADTEMTTQSV--ASQLELQRLHTG----RTVPVETAATLLKRMLF 469
+ ++ +G D + +Q ++++ + + E A+ + +
Sbjct: 65 CAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQS 124
Query: 468 RYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNE 289
G +L++ G+D GP +Y + P G+ +G S AA E KR +E
Sbjct: 125 GGVRPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLE---KRYNDE 181
Query: 288 EEGKKLVRDAIAA--GIFNDLGSGSNVDLCVI 199
E V AI A F + N+++ V+
Sbjct: 182 LELDDAVHTAILALKETFEGELTEDNIEIAVV 213
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 38.7 bits (86), Expect = 0.001
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Frame = -1
Query: 753 PKATKTGTTIVGIIYADG-VILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 577
P GTT+ I DG IL DTR+ ++ + ++H + ++ +G AD
Sbjct: 8 PYVQNGGTTVA--IAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADA 65
Query: 576 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLF--RYQGHIGAALVLGGVDRTGP-H 406
+ + +++L + R + ++ A +++ +L+ R+ + + G+D+ G
Sbjct: 66 LALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYY-VYTTVAGIDKEGKGE 124
Query: 405 IYCIYPHGSVDK 370
IY P GS ++
Sbjct: 125 IYSFDPVGSYER 136
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 33.9 bits (74), Expect = 0.029
Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 5/147 (3%)
Frame = -1
Query: 756 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 577
A KA + +T +GI DGVIL + T + N +I + ++ G D
Sbjct: 26 AYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVN-NRIGSVDRHIGIATTGFIPDG 84
Query: 576 EMTTQSVASQLELQRLHTGRTVPVETAATLLKR--MLFRYQGHI---GAALVLGGVDRTG 412
+ + + R + G +P A L LF + G + D G
Sbjct: 85 QHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSEG 144
Query: 411 PHIYCIYPHGSVDKLPYATMGSGSLAA 331
PH+Y + P+G A G G A
Sbjct: 145 PHLYMVEPNGVYWGYNGAAAGKGRQVA 171
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 33.1 bits (72), Expect = 0.050
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 5/152 (3%)
Frame = -1
Query: 756 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 577
A +A K G+ VG++ +L A R E K K+ + ++ AG A D
Sbjct: 25 ALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQK---KLIRIDDHIGIAIAGLAPDA 81
Query: 576 EMTTQSVASQLELQRLHTGRTVPVETAAT-LLKRMLFRYQGH----IGAALVLGGVDRTG 412
+ + + + + R +PV + + ++ Q + G ++ G D +G
Sbjct: 82 RVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDESG 141
Query: 411 PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 316
PH+ P G V + +MGS S +A E
Sbjct: 142 PHLLEFQPSGLVLEYLGTSMGSRSQSARTYIE 173
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 32.7 bits (71), Expect = 0.067
Identities = 35/196 (17%), Positives = 82/196 (41%), Gaps = 12/196 (6%)
Frame = -1
Query: 738 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQS 559
TG++++ + +ADGV++ AD A+ ++ + +++ + N G +D + Q
Sbjct: 42 TGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQ-IQR 100
Query: 558 VASQLELQRLHTGRTVPVETA--ATLLKRMLFRYQGHIGA---ALVLGGVDRTGPHIYCI 394
+ +LE++ + G ++ + L ++L+ + + L++ GVD Y
Sbjct: 101 LLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVA 160
Query: 393 YP--HGSVDKLPYATMGSGSLAAM-----AVFEAGWKRDMNEEEGKKLVRDAIAAGIFND 235
+ G+ P G A+ A + WK +++E + + + + + D
Sbjct: 161 FADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRWK-TLSKESARATIDECMRVLFYRD 219
Query: 234 LGSGSNVDLCVIRNTG 187
S + + I G
Sbjct: 220 ARSLNKFSVATITPEG 235
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.5 bits (58), Expect = 2.5
Identities = 29/105 (27%), Positives = 44/105 (41%)
Frame = -1
Query: 501 TAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAV 322
T T+ K G G L++ ++R SV KLP T+ + A
Sbjct: 2346 TCVTVCKAFSIIVSGDAGGNLIIWDLNRAE-----FVSSLSVYKLPIQTIAVNARNAEIA 2400
Query: 321 FEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTG 187
F G+ + GK LV+D ++ I+N+ S N+ LC TG
Sbjct: 2401 FSTGFYCCVVNVNGKILVKDKLSR-IYNE-NSDENI-LCSCFYTG 2442
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 27.5 bits (58), Expect = 2.5
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +1
Query: 46 WAYQNRFY--LERYYTLLKHSSCTKSISIRTLLFPLHISFFISS*ILGRASVTNNAQVNV 219
WA+ N++ L+RY +LLK+++ + + +R + + + + AS TN+
Sbjct: 1525 WAHWNQYQAILKRYVSLLKNNAIDQKVVVRLITAVVSALRPLDDAV---ASYTNSEMNIE 1581
Query: 220 RT*TQVIEYTSSNSI-SDKLFSFFLIHITFPTCFKHCHSRKRS 345
+ Q + ++S+ S++ F+ L + FPT + H R S
Sbjct: 1582 QFDGQKKKCVLASSLPSEERFTEVLTNDFFPTLMLYLHIRDES 1624
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,497,633
Number of Sequences: 5004
Number of extensions: 71285
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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