Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14c02
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 308 5e-84
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 112 4e-25
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 111 7e-25
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 65 6e-11
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 61 1e-09
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 57 2e-08
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 54 1e-07
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 54 2e-07
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 49 5e-06
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 49 5e-06
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 48 7e-06
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 44 2e-04
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 42 5e-04
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 38 0.010
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 29 4.6
01_01_0117 + 864966-865686,866860-866883,867006-868063 28 8.1
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 308 bits (755), Expect = 5e-84
Identities = 147/252 (58%), Positives = 182/252 (72%), Gaps = 1/252 (0%)
Frame = -1
Query: 822 PVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKN 643
P GFS++N RNA L +KG P KTGTTIVG+++ DGV+LGADTRATE +V+DKN
Sbjct: 9 PKGGFSYDNCARNAMLVEKGLKMPGFLKTGTTIVGLVFQDGVVLGADTRATEGPIVADKN 68
Query: 642 CQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY 463
C+KIHY+A N+YCCGAGTAADTE T V+SQL+L R TGR V T+ TLLK LF Y
Sbjct: 69 CEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTSLTLLKSHLFSY 128
Query: 462 QGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEE 283
QGH+ AALVLGGVD TGPH++ +YPHGS D LP+ATMGSGSLAAM+VFE+ +K + EE
Sbjct: 129 QGHVSAALVLGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKYKEGLTREE 188
Query: 282 GKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKG-KKQGSYRYALGT 106
G +LV +AI GIFNDLGSGSNVD+CVI G +YLR ++ N + Y + G
Sbjct: 189 GIQLVAEAIRGGIFNDLGSGSNVDVCVI-TKGKTEYLRNHQLPNPRTYVSSKGYNFTKGQ 247
Query: 105 TAVLKQRVIPLE 70
T VL ++ L+
Sbjct: 248 TVVLSTKITQLK 259
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 112 bits (269), Expect = 4e-25
Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 1/192 (0%)
Frame = -1
Query: 759 PAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD 580
P + GTTIVG+ Y GV+L AD+R + V+++ KI L N+Y C +G+AAD
Sbjct: 17 PTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAAD 76
Query: 579 TEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDR-TGPHI 403
T++ ++ V L + G+ V+ AA L++ + ++ + + A +++GG D+ G I
Sbjct: 77 TQVISEYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQI 136
Query: 402 YCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSG 223
+ + G++ + P+A GSGS + + WK M++EE +K V ++ I D SG
Sbjct: 137 FSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASG 196
Query: 222 SNVDLCVIRNTG 187
V I G
Sbjct: 197 GVVRTVTINADG 208
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 111 bits (267), Expect = 7e-25
Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 1/192 (0%)
Frame = -1
Query: 759 PAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD 580
P + GTTIVG+ Y GV+L AD+R + V+++ KI L N+Y C +G+AAD
Sbjct: 17 PTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAAD 76
Query: 579 TEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDR-TGPHI 403
T++ + V L + G+ V+ AA L++ + ++ + + A +++GG D+ G I
Sbjct: 77 TQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQI 136
Query: 402 YCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSG 223
+ + G++ + P+A GSGS + + WK M++EE +K V ++ I D SG
Sbjct: 137 FSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASG 196
Query: 222 SNVDLCVIRNTG 187
V I G
Sbjct: 197 GVVRTVTINADG 208
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 65.3 bits (152), Expect = 6e-11
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
Frame = -1
Query: 756 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 577
A KA T+VGI DG++LG + T ++ N +++H + + AG AAD
Sbjct: 27 AGKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMILKGSN-RRLHSVHRHSGLAVAGLAADG 85
Query: 576 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRM-----LFRYQGHIGAALVLGGVDRTG 412
S+ G +PV+ A + L+ + G ++LGG DR G
Sbjct: 86 RQIVSRAKSEAASYEKVYGEPMPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDG 145
Query: 411 PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRD 298
P +Y I P G K A +G G AA G ++D
Sbjct: 146 PQLYMIEPSGLSYKYFGAALGKGRQAAKTCVYDGSRKD 183
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 60.9 bits (141), Expect = 1e-09
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Frame = -1
Query: 600 GAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH-IGAALVLGGV 424
G GT A E+ A Q L L R + + A+ LL +L+ Y+G + ++ G
Sbjct: 52 GIGTWASRELKV-GYAFQCRLHELANKRRISIAGASKLLANILYSYRGMGLSIGTMIAGW 110
Query: 423 DRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGI 244
D GP +Y + G+ ++GSGSL A + + G++ M EE +L R AI
Sbjct: 111 DEKGPGLYYVDSEGARLMGSRFSVGSGSLYAYGILDEGYRYVMPVEEAAELARRAIYQAT 170
Query: 243 FNDLGSGSNVDL 208
F D SG V +
Sbjct: 171 FRDGASGGCVSV 182
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 57.2 bits (132), Expect = 2e-08
Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 10/177 (5%)
Frame = -1
Query: 756 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 577
A +A K G+T +G+ DGV+L + R T + ++ + +KI + ++ C +G AD
Sbjct: 40 AIEAIKLGSTAIGLKTKDGVVLAVEKRVT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADA 98
Query: 576 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-QGH-------IGAALVLGGVD 421
+ + + R G + VE+ + + R+ +G G +L++ G D
Sbjct: 99 RTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHD 158
Query: 420 RTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNE--EEGKKLVRDAI 256
GP +Y P G+ + +GSGS A + + + + + E K+ + +AI
Sbjct: 159 ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKSLTVFIYEKKRNIENAI 215
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 54.0 bits (124), Expect = 1e-07
Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 13/205 (6%)
Frame = -1
Query: 738 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD-TEMTTQ 562
TG++I+ + Y DGVI+ +DT A+ + + K+ ++I + + +G +D E+
Sbjct: 368 TGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEFSDFQEILRY 427
Query: 561 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH---IGAALVLGGVDRTGP-----H 406
L G ++ + + L R+++ + + +LV+GGV + GP +
Sbjct: 428 LDELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRRNKFDPLWNSLVIGGV-KKGPKGEEKY 486
Query: 405 IYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGS 226
+ + G+ + + G G+ A+ + W+ DM EE KLV + ++ D S
Sbjct: 487 LGMVNMIGTHFEENHIATGFGNHMAIPILRTEWREDMTFEEAVKLVEKCLLVLLYRDRSS 546
Query: 225 GSNVDLCVIRNTG----PAQYLRTY 163
+ + I G P L+TY
Sbjct: 547 INKFQIAKITTEGATIYPPYSLKTY 571
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 53.6 bits (123), Expect = 2e-07
Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 13/160 (8%)
Frame = -1
Query: 756 APKATKTGTTIVGIIYADGVILGADTRATENTVV--SDKNCQKIHY------LASNMYCC 601
A KA T+VGI DG++LG + T ++ S++ +H+ + N+
Sbjct: 27 ATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLDIILINVMAV 86
Query: 600 GAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRM-----LFRYQGHIGAALV 436
AG AAD S+ G + V+ A + L+ + G ++
Sbjct: 87 -AGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVI 145
Query: 435 LGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 316
LGG DR GP +Y I P G K A +G G AA E
Sbjct: 146 LGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIE 185
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 48.8 bits (111), Expect = 5e-06
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 5/179 (2%)
Frame = -1
Query: 714 IYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQ 535
+ A+GV++ + + + +V + + QKI L N+ +G D + + Q +
Sbjct: 99 VAANGVVIATEKKLP-SILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQY 157
Query: 534 RLHTGRTVPV-----ETAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDK 370
T+PV ETAA + + G +L++ G D GP +Y + P GS
Sbjct: 158 YRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFS 217
Query: 369 LPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRN 193
+ MG A E + DM ++ + G + S +N+++ +IR+
Sbjct: 218 WKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQI-SANNIEIGIIRS 275
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 48.8 bits (111), Expect = 5e-06
Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 5/177 (2%)
Frame = -1
Query: 708 ADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRL 529
A+GV++ + + + +V + + QKI L N+ +G D + + Q +
Sbjct: 64 ANGVVIATEKKLP-SILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYR 122
Query: 528 HTGRTVPV-----ETAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLP 364
T+PV ETAA + + G +L++ G D GP +Y + P GS
Sbjct: 123 LYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWK 182
Query: 363 YATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRN 193
+ MG A E + DM ++ + G + S +N+++ VIR+
Sbjct: 183 ASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQI-SANNIEIGVIRS 238
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 48.4 bits (110), Expect = 7e-06
Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 7/193 (3%)
Frame = -1
Query: 726 IVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQ 547
++G++ D ++ ADT A ++ +V + K+ L S+ +G D T+ +
Sbjct: 4 VIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKN 63
Query: 546 LELQRLHTGRTVPVETAATL------LKRMLFRYQGHIGAALVLGGVDR-TGPHIYCIYP 388
L L + +P+ TAAT L L + ++ ++L G D G +Y I
Sbjct: 64 LHLYQFR--NNIPLSTAATANFTRGELATALRKNPYYVN--VLLAGYDSDVGASLYYIDY 119
Query: 387 HGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDL 208
+ K+ G GS +++ + ++ DM+ EE LV I + + N +
Sbjct: 120 IATFHKIEKGAFGYGSYFCLSLMDKLYRPDMSVEEAVDLVDKCIKEIRLRLVVAPQNFII 179
Query: 207 CVIRNTGPAQYLR 169
++ G +Y R
Sbjct: 180 KIVDKEGAREYAR 192
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 44.0 bits (99), Expect = 2e-04
Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 7/210 (3%)
Frame = -1
Query: 756 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 577
A +A + G VG+ +D V+LG + ++T + ++ +KI L +++ AG AD
Sbjct: 23 ALEAVRKGNAAVGVRGSDTVVLGVEKKSTPK-LQDSRSVRKIASLDTHIALACAGLKADA 81
Query: 576 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY--QGHI---GAALVLGGVD--R 418
+ + + RL V VE + + +Y G + G + ++ G D
Sbjct: 82 RVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYT 141
Query: 417 TGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFN 238
P +Y P G+ G S + E +K E GK+ ++ AI A +
Sbjct: 142 DKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK----ETSGKETIKLAIRALLEV 197
Query: 237 DLGSGSNVDLCVIRNTGPAQYLRTYEEANV 148
G N+++ V+ LR EEA +
Sbjct: 198 VESGGKNIEIAVMTQ---KDGLRQLEEAEI 224
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 42.3 bits (95), Expect = 5e-04
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 7/210 (3%)
Frame = -1
Query: 756 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 577
A +A + G VG+ D V+LG + ++T + ++ +KI L +++ AG AD
Sbjct: 93 ALEAVRKGNAAVGVRGTDTVVLGVEKKSTPK-LQDSRSMRKIASLDTHIALACAGLKADA 151
Query: 576 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY--QGHI---GAALVLGGVD--R 418
+ + + RL V VE + + +Y G + G + ++ G D
Sbjct: 152 RVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYT 211
Query: 417 TGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFN 238
P +Y P G+ G S + E +K + GK+ ++ AI A +
Sbjct: 212 EKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK----DTSGKETIKLAIRALLEV 267
Query: 237 DLGSGSNVDLCVIRNTGPAQYLRTYEEANV 148
G N+++ V+ + LR EEA +
Sbjct: 268 VESGGKNIEIAVMTH---KDGLRELEEAEI 294
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 37.9 bits (84), Expect = 0.010
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = -1
Query: 450 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 271
G L++ G+D +G H+Y P G+ + +GS S AA E ++ N+ ++L
Sbjct: 131 GVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFE-GYNDYTPEQL 189
Query: 270 VRDAIAA 250
++DA++A
Sbjct: 190 IKDALSA 196
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Frame = -3
Query: 289 GRRKKACP---RCYCCWY 245
G +K ACP RCY CWY
Sbjct: 139 GHQKSACPGSTRCYNCWY 156
>01_01_0117 + 864966-865686,866860-866883,867006-868063
Length = 600
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +3
Query: 63 ILPREVLHAA*AQQLYQEHIYTN---LAFSPSH*LLHKFLDIGQ 185
IL VL + +Y H+ N L S H LLHKF+ + Q
Sbjct: 76 ILDHPVLGSCKVTMIYYRHVIMNAIPLVDSSPHCLLHKFISVNQ 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,067,315
Number of Sequences: 37544
Number of extensions: 489157
Number of successful extensions: 1169
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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