Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14c02
(840 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 200 8e-52
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 102 3e-22
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 94 1e-19
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 56 2e-08
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 47 2e-05
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 45 8e-05
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 41 0.001
U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta... 40 0.002
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 35 0.063
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ... 31 1.0
Z77661-2|CAB01184.4| 265|Caenorhabditis elegans Hypothetical pr... 31 1.3
U00035-4|AAA50646.2| 482|Caenorhabditis elegans Hypothetical pr... 29 5.4
AC006749-2|AAF60533.3| 731|Caenorhabditis elegans Hypothetical ... 29 5.4
AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical ... 28 7.2
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p... 28 9.5
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 200 bits (489), Expect = 8e-52
Identities = 99/249 (39%), Positives = 149/249 (59%), Gaps = 1/249 (0%)
Frame = -1
Query: 810 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI 631
F F N RN + + G APK T TGTTIV + + G+++GAD+RAT +++DK+C+K+
Sbjct: 21 FDFSNCIRNQAMCKMGGKAPKLTSTGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKV 80
Query: 630 HYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHI 451
H L ++Y CGAGTAAD + T+ ++ L L L+TGR V TA K+ LF YQG+I
Sbjct: 81 HKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTGRKARVITALRQAKQHLFNYQGYI 140
Query: 450 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 271
GA L++GGVD TGPH+Y +G+ P+ GSGS AA+ + E +K DM ++E +KL
Sbjct: 141 GAYLLIGGVDPTGPHLYMCSANGTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKL 200
Query: 270 VRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQG-SYRYALGTTAVL 94
V+ A+ AG+ D SG++++L +I + E + + Y++ G T VL
Sbjct: 201 VQRALEAGMHGDNASGNSLNLVIIEPSETVFKGPIVPEFCKRPEPNDLVYKFQAGATKVL 260
Query: 93 KQRVIPLEV 67
K + +V
Sbjct: 261 KHKTYKYDV 269
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 102 bits (245), Expect = 3e-22
Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 1/194 (0%)
Frame = -1
Query: 765 GFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTA 586
GF + TGTT++ + Y GV++G D+R + + ++ + KI + NM C +G+A
Sbjct: 13 GFYPQEEISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSA 72
Query: 585 ADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVD-RTGP 409
ADT+ +++ + + V + ++ + ++ L+ Y+ + A++++ G D G
Sbjct: 73 ADTQAIADIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGG 132
Query: 408 HIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLG 229
+Y I G V + GSGS ++ W+ ++ EE K +V+ A+ F D
Sbjct: 133 QVYAIPIGGFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGS 192
Query: 228 SGSNVDLCVIRNTG 187
SG V L VI G
Sbjct: 193 SGGVVRLAVINKAG 206
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 93.9 bits (223), Expect = 1e-19
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 8/192 (4%)
Frame = -1
Query: 741 KTGTTIVGIIY-----AD--GVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAA 583
+ GTT + +Y AD G+I+ D+RA+ +S K+ KI + M AG AA
Sbjct: 62 RKGTTTLAFVYEPATPADKGGIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAA 121
Query: 582 DTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH-IGAALVLGGVDRTGPH 406
D + T+ VA L L ++ V A+ L+ Y+G + ++ G D+ GP
Sbjct: 122 DCQFWTRIVAKYCTLYELREKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ 181
Query: 405 IYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGS 226
I+ + G +L ++GSGSL A + + +K M ++E +KL AI + D GS
Sbjct: 182 IFKVDSEGDRCQLKVCSVGSGSLNAYGILDNHYKPKMTDDEARKLGLRAIMHATYRDSGS 241
Query: 225 GSNVDLCVIRNT 190
G +LC I T
Sbjct: 242 GGVCNLCHITPT 253
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 56.4 bits (130), Expect = 2e-08
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 3/175 (1%)
Frame = -1
Query: 738 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQS 559
TG T+V + + V + +D R E + +K+H + +Y AG +D +
Sbjct: 7 TGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEK 66
Query: 558 VASQLELQRLHTGRTVPVETAATLLKRMLF--RYQGHIGAALVLGGVDRTGPHIYCIYPH 385
+ + L L R + + + ++ + + R+ + LV G D P+I C+
Sbjct: 67 IMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTI 126
Query: 384 GSVD-KLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSG 223
G V + +G+G + V E W+ +M +E + +I + + D SG
Sbjct: 127 GCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASG 181
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 54.0 bits (124), Expect = 1e-07
Identities = 46/202 (22%), Positives = 92/202 (45%), Gaps = 9/202 (4%)
Frame = -1
Query: 756 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 577
A +A K G+T +GI ++GV+L A+ R+T +V+D +KI + ++ AG AD+
Sbjct: 27 AIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDA-IEKISKVDQHIGVTFAGLIADS 85
Query: 576 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY---------QGHIGAALVLGGV 424
+ + + R + VE + + ++ G A++ GV
Sbjct: 86 RTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGV 145
Query: 423 DRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGI 244
D+ G ++ + P G+ ++G+ S A + + + +EG K+ AI +
Sbjct: 146 DQEGAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKMAL-AILKQV 204
Query: 243 FNDLGSGSNVDLCVIRNTGPAQ 178
+ + +NV++ VI+ T A+
Sbjct: 205 MEEKLNSANVEVVVIKPTVDAK 226
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 46.8 bits (106), Expect = 2e-05
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 6/168 (3%)
Frame = -1
Query: 756 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 577
A +A T +GI+ ++G+++ A+ + + +K++ L+ N+ C AG AD
Sbjct: 24 AMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADA 83
Query: 576 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDR-T 415
+ + R G +PVE L RY + G +L+ G D+
Sbjct: 84 NILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHY 143
Query: 414 GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 271
G +Y P G+ +GS AA+ + + +K N EE K+L
Sbjct: 144 GYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYK-SPNLEEAKQL 190
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 44.8 bits (101), Expect = 8e-05
Identities = 41/195 (21%), Positives = 84/195 (43%), Gaps = 8/195 (4%)
Frame = -1
Query: 756 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 577
A +A K G+T VG+ D +++G + ++ + D+ +KIH + ++ AG +AD
Sbjct: 23 AQEAVKKGSTAVGVRGKDCIVIGVEKKSIP-ALQDDRTIRKIHMIDDHVMLAFAGLSADA 81
Query: 576 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDRTG 412
+ + + +L V V + + R+ + G ++++GG D G
Sbjct: 82 RVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDG 141
Query: 411 -PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGK--KLVRDAIAAGIF 241
P ++ P G+ + G G E + + +E KLV ++A +
Sbjct: 142 TPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKLVVKSLAQVV- 200
Query: 240 NDLGSGSNVDLCVIR 196
GS N+++ V++
Sbjct: 201 -PPGS-QNIEIAVMK 213
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 40.7 bits (91), Expect = 0.001
Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 10/219 (4%)
Frame = -1
Query: 813 GFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATEN--TVVSDKNC 640
GFS F + L Q + A A K G VG+ DGV+L ATEN +V++D
Sbjct: 6 GFSLTTFSPSGKLMQIEY-ALNAVKNGQPSVGLRAKDGVVL-----ATENVGSVLTDDQ- 58
Query: 639 QKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY- 463
K+ ++ ++ C +G D + + + G +P T + ++ Y
Sbjct: 59 PKVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYT 118
Query: 462 -QGHI---GAALVLGGVDRT--GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKR 301
G + GA+L++ G D+ P ++ P G+ +G + A E +
Sbjct: 119 QSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSE 178
Query: 300 DMNEEEGKKLVRDAIAAGIFNDLG-SGSNVDLCVIRNTG 187
+ ++G + D+G + +NV++ V +TG
Sbjct: 179 ALELDDGIHTALLTLRESF--DVGMNENNVEVAVCNSTG 215
>U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta
subunit protein 4 protein.
Length = 202
Score = 40.3 bits (90), Expect = 0.002
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 7/164 (4%)
Frame = -1
Query: 726 IVGIIYADGVILGADTRA-TENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVAS 550
+VGI + VIL AD +++D K + L + G D
Sbjct: 7 LVGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKR 66
Query: 549 QLELQRLHTGRTVPVETAATLLKRML---FRYQGHIGAALVLGGVDRTGPHIYC---IYP 388
L+L + G V A ++R + R Q H +++GG D + Y
Sbjct: 67 NLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYL 126
Query: 387 HGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAI 256
+ + PY G A+ + +K+DM E EG L+ I
Sbjct: 127 ANGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCI 170
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 35.1 bits (77), Expect = 0.063
Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 13/183 (7%)
Frame = -1
Query: 744 TKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTT 565
T TGT+++ + Y GV++ D + + KN + + + N+ G AD
Sbjct: 14 TCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWLQ 73
Query: 564 QSVASQLELQRLHTGRTVPVETAATLLKRMLFR--YQGHIGAALVLGGVDR--------T 415
+ Q+ L + P L + + + LV+ GV+ +
Sbjct: 74 NVIERQVLLWKRFDQDIGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGVEEEEKNNKETS 133
Query: 414 GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKR---DMNEEEGKKLVRDAIAAGI 244
P I I G ++ + G G+ E W++ D++ EE + ++R ++ +
Sbjct: 134 TPFIGVITQKGCAYQVKHIATGLGAFLLNQAVEDEWRKKGEDLSREEAEAVLRKSLELTL 193
Query: 243 FND 235
++D
Sbjct: 194 YHD 196
>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
protein Y39D8B.1 protein.
Length = 1372
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 629 WIFWQFLSETTVFSVALVSAPRITPSAYIIPTIVVPVLVALGAGNPF 769
WIF L + ++S P I A + P +VP++++ G G PF
Sbjct: 687 WIFVPVLVSPRILGAVILS-PVIMSPAILTPLCMVPIILSPGVGLPF 732
>Z77661-2|CAB01184.4| 265|Caenorhabditis elegans Hypothetical
protein F40G12.2 protein.
Length = 265
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 660 VVSDKNCQKIHYLASNMYCC 601
V S +NC+K+H+L+SN + C
Sbjct: 210 VKSQENCEKVHFLSSNFWNC 229
>U00035-4|AAA50646.2| 482|Caenorhabditis elegans Hypothetical
protein R01H2.4 protein.
Length = 482
Score = 28.7 bits (61), Expect = 5.4
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Frame = -1
Query: 423 DRTGPHIYCIYPHGSVDKLPYATMGSGSLAAM---AVFEAGWKRDMNEEEGKKLVRDAI- 256
+ T P + PH P + + +A M ++F AG D+ V DA+
Sbjct: 309 NNTSPKMSIYLPHWKTKDFPSSRISQHLVATMNLNSLFVAGGFGDL-------AVEDAVP 361
Query: 255 -AAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYR 121
A G + + L RN+ YLRT EE + GKK R
Sbjct: 362 SATGDPKKVSHLQHFGLLSFRNSPKKTYLRTPEEKTLLGKKSRQSR 407
>AC006749-2|AAF60533.3| 731|Caenorhabditis elegans Hypothetical
protein Y39D8B.3 protein.
Length = 731
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 629 WIFWQFLSETTVFSVALVSAPRITPSAYIIPTIVVPVLVALGAGNPF 769
W+F L + A+V +P + + P +VPV+++ G G PF
Sbjct: 596 WVFVPVLVSPRILG-AVVLSPIVFSPVILSPLCLVPVILSPGVGLPF 641
>AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical
protein Y37H2A.6 protein.
Length = 410
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 16 LHIHRLKCFCWAYQNRFYLERYYTLLKHSSCTKSISIRTLL 138
LHI + + + Q F+LER Y + S +I+IR +L
Sbjct: 284 LHITNIVAYSFPIQKLFHLERLYVTIGVFSAHDAINIRDVL 324
>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical protein
F54E12.2 protein.
Length = 1091
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/78 (23%), Positives = 40/78 (51%)
Frame = -1
Query: 291 EEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYRYAL 112
E+ G +++ ++AAG +G N + V + PA + ++ G+K+ + + L
Sbjct: 982 EKGGARVMLLSLAAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQKKDVFIHRL 1041
Query: 111 GTTAVLKQRVIPLEVESI 58
T ++QRV+ L+ + +
Sbjct: 1042 VTKGTIEQRVVMLQKDKV 1059
>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
protein F54E12.2 protein.
Length = 1091
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/78 (23%), Positives = 40/78 (51%)
Frame = -1
Query: 291 EEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYRYAL 112
E+ G +++ ++AAG +G N + V + PA + ++ G+K+ + + L
Sbjct: 982 EKGGARVMLLSLAAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQKKDVFIHRL 1041
Query: 111 GTTAVLKQRVIPLEVESI 58
T ++QRV+ L+ + +
Sbjct: 1042 VTKGTIEQRVVMLQKDKV 1059
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,548,765
Number of Sequences: 27780
Number of extensions: 415066
Number of successful extensions: 1223
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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