Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14c01
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089617-1|AAL90355.1|  958|Drosophila melanogaster RE32881p pro...    30   2.2  
AE014298-1748|AAF48140.5| 1040|Drosophila melanogaster CG32656-P...    30   2.2  
AY071040-1|AAL48662.1|  507|Drosophila melanogaster RE12806p pro...    29   2.9  
AE014134-1979|AAF53024.1|  507|Drosophila melanogaster CG17086-P...    29   2.9  
AE014134-48|AAF51541.1|  953|Drosophila melanogaster CG4648-PA p...    29   3.8  
AY118897-1|AAM50757.1|  566|Drosophila melanogaster LD07633p pro...    28   6.7  
AY118567-1|AAM49936.1|  971|Drosophila melanogaster LD40170p pro...    28   6.7  
AY060619-1|AAL28167.1|  395|Drosophila melanogaster GH04442p pro...    28   6.7  
AE014134-2198|AAF53187.2|  395|Drosophila melanogaster CG6405-PA...    28   6.7  
AE014134-403|AAN10428.1|  971|Drosophila melanogaster CG9866-PB,...    28   6.7  
AE014134-402|AAF51260.1|  971|Drosophila melanogaster CG9866-PA,...    28   6.7  
AY089461-1|AAL90199.1|  208|Drosophila melanogaster AT27111p pro...    28   8.8  
AE014296-2549|AAF49607.1|  538|Drosophila melanogaster CG13449-P...    28   8.8  

>AY089617-1|AAL90355.1|  958|Drosophila melanogaster RE32881p protein.
          Length = 958

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/78 (24%), Positives = 32/78 (41%)
 Frame = -2

Query: 397  ENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDR 218
            EN ++  SN    +K    P  G D  +    K P + +K   +  +N   S +  + D 
Sbjct: 795  ENASVEDSNKASSEKSKDKPKSGEDQSKEQEQKKPSSEEKEKDSKEKNDKDSKEKKDND- 853

Query: 217  PSGSKDNFEEKEITPDQK 164
                KD  +E++    QK
Sbjct: 854  SKDKKDKSKEEKDNESQK 871


>AE014298-1748|AAF48140.5| 1040|Drosophila melanogaster CG32656-PA
            protein.
          Length = 1040

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/78 (24%), Positives = 32/78 (41%)
 Frame = -2

Query: 397  ENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDR 218
            EN ++  SN    +K    P  G D  +    K P + +K   +  +N   S +  + D 
Sbjct: 877  ENASVEDSNKASSEKSKDKPKSGEDQSKEQEQKKPSSEEKEKDSKEKNDKDSKEKKDND- 935

Query: 217  PSGSKDNFEEKEITPDQK 164
                KD  +E++    QK
Sbjct: 936  SKDKKDKSKEEKDNESQK 953


>AY071040-1|AAL48662.1|  507|Drosophila melanogaster RE12806p
           protein.
          Length = 507

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 267 ISSEINYVQLNPMRVIGLQAVKIILRKKRSLL 172
           + SE+N VQ  PM    L+ ++ +LRK +SLL
Sbjct: 335 LQSEVNAVQALPMAAKRLEEIERLLRKYKSLL 366


>AE014134-1979|AAF53024.1|  507|Drosophila melanogaster CG17086-PA
           protein.
          Length = 507

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 267 ISSEINYVQLNPMRVIGLQAVKIILRKKRSLL 172
           + SE+N VQ  PM    L+ ++ +LRK +SLL
Sbjct: 335 LQSEVNAVQALPMAAKRLEEIERLLRKYKSLL 366


>AE014134-48|AAF51541.1|  953|Drosophila melanogaster CG4648-PA
           protein.
          Length = 953

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = -2

Query: 274 ISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFR-RQSFAETWNKSPK 98
           ++NF R+  R +KS+  +RP     N+ +   +  +  Q + K F+ + SF +  ++ P 
Sbjct: 351 VNNFMRSMQRGSKSHSVERP-----NYPKVSYSIPKSQQMIRKKFQHKDSFTKLGDEPPG 405

Query: 97  SPGENSSHSKRLAVKKVISSYFGKSQKVTSAD 2
              EN+  ++    K  IS+   +S     AD
Sbjct: 406 QSIENNKFNESQRRKSGISTDHMESLDSKCAD 437


>AY118897-1|AAM50757.1|  566|Drosophila melanogaster LD07633p
           protein.
          Length = 566

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 298 NPKTWKKSISNFFRNQLRST 239
           NP  W+KS++NF R+++  T
Sbjct: 173 NPGKWRKSLNNFIRSKITET 192


>AY118567-1|AAM49936.1|  971|Drosophila melanogaster LD40170p
           protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 4/126 (3%)
 Frame = -2

Query: 415 PEGSQPENDTLSKSNDICQKKPNKVPAEGTDSLE---LTSYKNPKTWKKSISN-FFRNQL 248
           P G+   +D+   + +I Q+    VP+  TD+L    L+S  N  +   S+ +       
Sbjct: 153 PNGTAISSDSRLTATEISQEGGAIVPSSPTDTLSASTLSSCSNGSSSSASLQHPAAAGSS 212

Query: 247 RSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSK 68
            +T S+   R   S         +      S G   R +S     + SP      S+H +
Sbjct: 213 STTSSSSSSRHKSSSSKSSSSSSSKGSSSTSAGSRSRSKSSKNRHHSSPAPALLESNHKE 272

Query: 67  RLAVKK 50
               KK
Sbjct: 273 SKGSKK 278


>AY060619-1|AAL28167.1|  395|Drosophila melanogaster GH04442p
           protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 2/113 (1%)
 Frame = -2

Query: 337 AEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDR--PSGSKDNFEEKEITPDQK 164
           ++  DSLE     +P   +  +S   RN L     N G +  P    D  +E+E   D++
Sbjct: 247 SQSMDSLEHEHLVSPLKRRPKLSRSNRN-LTGAGINHGSKTEPEDETDEQDEEEDDEDEE 305

Query: 163 WQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVKKVISSYFGKSQKVTSA 5
            +  G+       A    + P  PG      + +   K+ S+    +   TSA
Sbjct: 306 TEQSGEEDEESGTATDDEREPTQPGNQVPPRENVFGAKIRSASKDIATPSTSA 358


>AE014134-2198|AAF53187.2|  395|Drosophila melanogaster CG6405-PA
           protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 2/113 (1%)
 Frame = -2

Query: 337 AEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDR--PSGSKDNFEEKEITPDQK 164
           ++  DSLE     +P   +  +S   RN L     N G +  P    D  +E+E   D++
Sbjct: 247 SQSMDSLEHEHLVSPLKRRPKLSRSNRN-LTGAGINHGSKTEPEDETDEQDEEEDDEDEE 305

Query: 163 WQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVKKVISSYFGKSQKVTSA 5
            +  G+       A    + P  PG      + +   K+ S+    +   TSA
Sbjct: 306 TEQSGEEDEESGTATDDEREPTQPGNQVPPRENVFGAKIRSASKDIATPSTSA 358


>AE014134-403|AAN10428.1|  971|Drosophila melanogaster CG9866-PB,
           isoform B protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 4/126 (3%)
 Frame = -2

Query: 415 PEGSQPENDTLSKSNDICQKKPNKVPAEGTDSLE---LTSYKNPKTWKKSISN-FFRNQL 248
           P G+   +D+   + +I Q+    VP+  TD+L    L+S  N  +   S+ +       
Sbjct: 153 PNGTAISSDSRLTATEISQEGGAIVPSSPTDTLSASTLSSCSNGSSSSASLQHPAAAGSS 212

Query: 247 RSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSK 68
            +T S+   R   S         +      S G   R +S     + SP      S+H +
Sbjct: 213 STTSSSSSSRHKSSSSKSSSSSSSKGSSSTSAGSRSRSKSSKNRHHSSPAPALLESNHKE 272

Query: 67  RLAVKK 50
               KK
Sbjct: 273 SKGSKK 278


>AE014134-402|AAF51260.1|  971|Drosophila melanogaster CG9866-PA,
           isoform A protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 4/126 (3%)
 Frame = -2

Query: 415 PEGSQPENDTLSKSNDICQKKPNKVPAEGTDSLE---LTSYKNPKTWKKSISN-FFRNQL 248
           P G+   +D+   + +I Q+    VP+  TD+L    L+S  N  +   S+ +       
Sbjct: 153 PNGTAISSDSRLTATEISQEGGAIVPSSPTDTLSASTLSSCSNGSSSSASLQHPAAAGSS 212

Query: 247 RSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSK 68
            +T S+   R   S         +      S G   R +S     + SP      S+H +
Sbjct: 213 STTSSSSSSRHKSSSSKSSSSSSSKGSSSTSAGSRSRSKSSKNRHHSSPAPALLESNHKE 272

Query: 67  RLAVKK 50
               KK
Sbjct: 273 SKGSKK 278


>AY089461-1|AAL90199.1|  208|Drosophila melanogaster AT27111p
           protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 156 DCHFWSGVISFSSKLSLLPE-GRSPSLDLVERS*F 257
           D   W G++SF+ +L+L  E G   S D +E++ F
Sbjct: 143 DFRAWCGIVSFAERLALADESGSDDSCDELEKADF 177


>AE014296-2549|AAF49607.1|  538|Drosophila melanogaster CG13449-PA
           protein.
          Length = 538

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 156 DCHFWSGVISFSSKLSLLPE-GRSPSLDLVERS*F 257
           D   W G++SF+ +L+L  E G   S D +E++ F
Sbjct: 473 DFRAWCGIVSFAERLALADESGSDDSCDELEKADF 507


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,338,758
Number of Sequences: 53049
Number of extensions: 409891
Number of successful extensions: 1496
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)