Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14c01
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr... 36 0.018
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr... 36 0.018
Z70203-3|CAA94106.2| 219|Caenorhabditis elegans Hypothetical pr... 30 0.87
Z81544-8|CAB04433.3| 399|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z81486-13|CAE47465.1| 611|Caenorhabditis elegans Hypothetical p... 28 3.5
AY221631-1|AAP97492.1| 611|Caenorhabditis elegans muscarinic ac... 28 3.5
AL034391-3|CAE47471.1| 611|Caenorhabditis elegans Hypothetical ... 28 3.5
AF016676-5|AAG24100.1| 473|Caenorhabditis elegans Cytochrome p4... 28 3.5
Z81129-1|CAB03408.1| 350|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical p... 27 8.1
>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 35.9 bits (79), Expect = 0.018
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Frame = -2
Query: 406 SQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNE 227
SQP+ + + K K+P KV EG D + S PKT KK S+ F + + E
Sbjct: 1291 SQPKKERVKKEPKE-PKEPKKVKKEGQDIKKFMSPAAPKTAKKEKSDGFNSDMSEESDVE 1349
Query: 226 GDR--PSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVK 53
D S D+ E+E + GK + + + + P + + +K+ A K
Sbjct: 1350 FDEGIDFDSDDDGVEREDVVSKPKPRTGKGAAKAEVIDL-SDDDEVPAKKPAPAKKAAPK 1408
Query: 52 KVISSY 35
K S +
Sbjct: 1409 KKKSEF 1414
>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 35.9 bits (79), Expect = 0.018
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Frame = -2
Query: 406 SQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNE 227
SQP+ + + K K+P KV EG D + S PKT KK S+ F + + E
Sbjct: 1291 SQPKKERVKKEPKE-PKEPKKVKKEGQDIKKFMSPAAPKTAKKEKSDGFNSDMSEESDVE 1349
Query: 226 GDR--PSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVK 53
D S D+ E+E + GK + + + + P + + +K+ A K
Sbjct: 1350 FDEGIDFDSDDDGVEREDVVSKPKPRTGKGAAKAEVIDL-SDDDEVPAKKPAPAKKAAPK 1408
Query: 52 KVISSY 35
K S +
Sbjct: 1409 KKKSEF 1414
>Z70203-3|CAA94106.2| 219|Caenorhabditis elegans Hypothetical
protein C05G5.3 protein.
Length = 219
Score = 30.3 bits (65), Expect = 0.87
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = -2
Query: 334 EGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQ- 158
E T+S T ++ ++ + F ++ +T++ D PS S++N KE++ K
Sbjct: 89 EKTESESETDEQDEDEEEEQMPQFNNRKITNTQNFCPDEPSTSQENPFAKELSDADKMNV 148
Query: 157 SLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVK 53
++GK+ + + A+ K+ + E S+ K K
Sbjct: 149 TIGKLHGKLATAQLKAKTRQIAAEMSNEEKEYEAK 183
>Z81544-8|CAB04433.3| 399|Caenorhabditis elegans Hypothetical
protein F49C5.4 protein.
Length = 399
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 268 NFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGK--VFRRQSFAETWNKSPK 98
+F+ R TKS + + DN EEK+ D+ W+ L + + E +K P+
Sbjct: 281 HFWMRDCRFTKSYLSIKATAKIDNEEEKKAIDDKVWKILNNYGIVKEMIVEENLDKGPR 339
>Z81486-13|CAE47465.1| 611|Caenorhabditis elegans Hypothetical
protein Y40H4A.1b protein.
Length = 611
Score = 28.3 bits (60), Expect = 3.5
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Frame = -2
Query: 307 SYKNPKTWKKSISNFFRNQLR----ST---KSNEGDRPSGSKDNFEEKEITPDQKWQSLG 149
S++N K WKK + F R ++ ST KS+ R ++D + E +TP +
Sbjct: 284 SFRNSKMWKK-VKKFSRRSMKRDVSSTSIIKSSGSMRKKNNQDGYVEDSVTP----CTSS 338
Query: 148 KVFRRQSFAETWNKSPKSPGENSSH--SKRLAVKKVISSYFGKS 23
+ +R+S+ S E+SS + L + SS+F S
Sbjct: 339 RNSKRKSWLRNCTGKSNSSSEDSSEAVAMNLDDTSLSSSHFALS 382
>AY221631-1|AAP97492.1| 611|Caenorhabditis elegans muscarinic
acetylcholine receptorlarge isoform protein.
Length = 611
Score = 28.3 bits (60), Expect = 3.5
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Frame = -2
Query: 307 SYKNPKTWKKSISNFFRNQLR----ST---KSNEGDRPSGSKDNFEEKEITPDQKWQSLG 149
S++N K WKK + F R ++ ST KS+ R ++D + E +TP +
Sbjct: 284 SFRNSKMWKK-VKKFSRRSMKRDVSSTSIIKSSGSMRKKNNQDGYVEDSVTP----CTSS 338
Query: 148 KVFRRQSFAETWNKSPKSPGENSSH--SKRLAVKKVISSYFGKS 23
+ +R+S+ S E+SS + L + SS+F S
Sbjct: 339 RNSKRKSWLRNCTGKSNSSSEDSSEAVAMNLDDTSLSSSHFALS 382
>AL034391-3|CAE47471.1| 611|Caenorhabditis elegans Hypothetical
protein Y40H4A.1b protein.
Length = 611
Score = 28.3 bits (60), Expect = 3.5
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Frame = -2
Query: 307 SYKNPKTWKKSISNFFRNQLR----ST---KSNEGDRPSGSKDNFEEKEITPDQKWQSLG 149
S++N K WKK + F R ++ ST KS+ R ++D + E +TP +
Sbjct: 284 SFRNSKMWKK-VKKFSRRSMKRDVSSTSIIKSSGSMRKKNNQDGYVEDSVTP----CTSS 338
Query: 148 KVFRRQSFAETWNKSPKSPGENSSH--SKRLAVKKVISSYFGKS 23
+ +R+S+ S E+SS + L + SS+F S
Sbjct: 339 RNSKRKSWLRNCTGKSNSSSEDSSEAVAMNLDDTSLSSSHFALS 382
>AF016676-5|AAG24100.1| 473|Caenorhabditis elegans Cytochrome p450
family protein 33C7 protein.
Length = 473
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -2
Query: 292 KTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLG--KVFRRQSFAE 119
K WK S +FF Q+ + + + D S ++ E + +K+++LG ++F + +
Sbjct: 235 KDWKNSFYDFFNTQIENHR-QKIDFDSEESQDYAEAYLKEQKKYEALGDTELFSNKQLSN 293
Query: 118 T 116
T
Sbjct: 294 T 294
>Z81129-1|CAB03408.1| 350|Caenorhabditis elegans Hypothetical
protein T23F1.3 protein.
Length = 350
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 379 WITYHFQAESLLGTTFPVFFSVLNFFTIQ*IQNYLCILSPVVIRVY 516
WI + LL T ++ ++ F +IQ I Y C +P +R++
Sbjct: 80 WIFSKTFLQLLLATWAGLYLVIVAFISIQFIYRYFCFFTPKNMRMF 125
>Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical
protein Y41E3.9 protein.
Length = 1440
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 167 KVAIFGESISSSKLCRNVEQ 108
K +FG +++S LCRN+E+
Sbjct: 103 KCVVFGNNLNSEDLCRNLEK 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,438,794
Number of Sequences: 27780
Number of extensions: 229567
Number of successful extensions: 726
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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