Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14b22
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 29 0.58
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 28 1.8
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 27 2.3
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 27 2.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.3
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 3.1
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 27 4.1
SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|c... 27 4.1
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 27 4.1
SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr... 27 4.1
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 27 4.1
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 5.4
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 5.4
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 26 5.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 5.4
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 7.1
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 7.1
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 7.1
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 26 7.1
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 26 7.1
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 25 9.4
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 9.4
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 9.4
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 9.4
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 9.4
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 9.4
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 29.5 bits (63), Expect = 0.58
Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 11/134 (8%)
Frame = -3
Query: 418 MENSTLFPVEVDLSQNCFQYKSAGQISEDVQDEDIEYAKEIQE---YHDLSVNDTREAKL 248
+EN+ PVEV+ S N + + ++ DE ++ E + D E K+
Sbjct: 782 IENTLTIPVEVEHSDNIDKGSEENDLGKEAVDEANNNQNDVLESVVVEQSTTTDDCENKV 841
Query: 247 MKKRQTDDNEHNDATEQLLPGIDTVDIDRSENND--------VSDNLTLLTELGLADAGA 92
+ + D N D GI+ I E D +N+ + ++ + + A
Sbjct: 842 YEGQMNDKNSSLDMV-NACEGINQTAIGFVEKPDKVTELIDEAEENIDISQDISMTETNA 900
Query: 91 NDEFGSFQNGLMDD 50
D+ +N ++ D
Sbjct: 901 VDDEVQAENSILQD 914
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 275 RQIVVLLYFFCVFYIFIL---DVLTNLTCRF 358
R +++ ++ FC+F+I + D+ T + CRF
Sbjct: 141 RPMIIAVFIFCIFHIAVATAKDIQTVMICRF 171
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -3
Query: 781 LXDMGTYLNKAIPDTKLTIRKYADTKFEYLSYCLKVKEMDDEEYGYNALQEPLYRVETGN 602
L +G LN+ P+ LTI+K KF ++ + + M D + YN L E YR+ +
Sbjct: 162 LEQVGIRLNRQPPNVTLTIKKNGGIKF---NHTVPLTHM-DYKMAYNILHE--YRIHNAD 215
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 2.3
Identities = 24/105 (22%), Positives = 46/105 (43%)
Frame = -3
Query: 454 LAVYHNETLEHLMENSTLFPVEVDLSQNCFQYKSAGQISEDVQDEDIEYAKEIQEYHDLS 275
++V ET++ ++EN + ++ QN GQIS+ + + +E E + +LS
Sbjct: 2 ISVQSTETIQKVLENEGDQQFDKEVVQNSDSNIETGQISDSL-TKAVEERAETESSSNLS 60
Query: 274 VNDTREAKLMKKRQTDDNEHNDATEQLLPGIDTVDIDRSENNDVS 140
T E++ K N H+ + I + + N+VS
Sbjct: 61 NFTTSESESSKPAYC-FNSHSQNMAEGSISIPVISHSMNVENEVS 104
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 2.3
Identities = 23/91 (25%), Positives = 43/91 (47%)
Frame = -3
Query: 388 VDLSQNCFQYKSAGQISEDVQDEDIEYAKEIQEYHDLSVNDTREAKLMKKRQTDDNEHND 209
V+L + +Y G+ + ++DE + K+ ++ HDL N + K E +D
Sbjct: 1095 VELEELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFVDDLK----------EKSD 1144
Query: 208 ATEQLLPGIDTVDIDRSENNDVSDNLTLLTE 116
A EQL + + + ++N S+N L+ E
Sbjct: 1145 ALEQLTNEKNELIVSLEQSN--SNNEALVEE 1173
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -3
Query: 313 EYAKEIQEYHDLSVNDTREAKLMKKRQTDDNEHNDA-TEQLLPGIDTVDIDRSENNDVSD 137
EY+ ++YH L VN E + + D+ N A ++ +L + +R E+ V D
Sbjct: 403 EYSSIFEDYHQLLVNFPSEGSIPDLDVSTDSAANGAFSKMILIDLAMHSANRLEHMQVPD 462
Query: 136 N--LTLLTEL 113
L LL+E+
Sbjct: 463 GYLLQLLSEV 472
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 4.1
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 152 ILGPVNVNGVDTREKLF--GSVIVLIVVRLTFLHQLRLSRVVNRQIVVLLYFFCVF 313
+L P N+N V +F GSVIVL +V L L + LS V Q LL +F
Sbjct: 84 MLDPYNLNYVSPSTVVFQRGSVIVLELVLLFALREYVLSSNVKDQRNALLTAIDIF 139
>SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 129
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -3
Query: 178 TVDIDRSENNDVSDNLTLLTELGLADAGANDEF--GSFQNGLMD 53
+++ D S +++ N+T L +LG D + D+F F+NG+ D
Sbjct: 2 SIEFDDSSRHNM--NMTQLMQLGAFDRRSGDDFMVQDFKNGIRD 43
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 444 TTTKPWSI*WRILHCS 397
TT KPWS+ I+HCS
Sbjct: 175 TTKKPWSMDENIVHCS 190
>SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 129
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -3
Query: 178 TVDIDRSENNDVSDNLTLLTELGLADAGANDEF--GSFQNGLMD 53
+++ D S +++ N+T L +LG D + D+F F+NG+ D
Sbjct: 2 SIEFDDSSRHNM--NMTQLMQLGAFDRRSGDDFMVQDFKNGIRD 43
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 169 IDRSENNDVSDNLTLLTELGLADAGANDEFGSFQNGLMDDF 47
I+ +E + DNLT +T+LG +EF Q ++D++
Sbjct: 254 IEENEGTEPHDNLTFMTDLGTPYYSLGNEFERKQ--ILDEY 292
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -1
Query: 417 WRILHCSQSKLTSRRTVFSINRQVKLVRTS 328
W HC QS L RTV + V L S
Sbjct: 777 WIYKHCFQSSLMENRTVILVTHNVHLFMDS 806
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 751 AIPDTKLTIRKYADTKFEYLSYCL-KVKEMDDEEYGYNA 638
++P T++T+ K T+F C + + +GYNA
Sbjct: 27 SVPSTRMTLAKVEGTEFGIFGTCTGNGTDCTETSFGYNA 65
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 232 TDDNEHNDATEQLLPGIDTVDIDRSENNDVSDNLTLLTELGLADAGANDEFGSFQNGLMD 53
TD N+ +LL + ID + +N++S+ LLTE + DA A F L
Sbjct: 76 TDINQVPREPYRLLKEFEWATIDVTNDNELSEVHELLTENYVEDATAMLRFAYISEFLRW 135
Query: 52 DFMP 41
MP
Sbjct: 136 ALMP 139
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 721 KYADTKFEYLSYCLKVKEMDDEEYGYNAL 635
K +++ ++L +C KV E+DD Y N +
Sbjct: 732 KLGNSQKKFLIWCFKVAELDDTLYPLNTV 760
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 7.1
Identities = 7/22 (31%), Positives = 17/22 (77%)
Frame = +2
Query: 8 IENVIDVAAALRHEIVHQSVLE 73
+EN++D+ R++++H S+L+
Sbjct: 146 LENLVDLGIYKRYQLIHDSILQ 167
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 671 FDLQTVGQILEFRVRVFPYRQFGVRYSFVQVSAHVXQDRL 790
F+L+ ++L F+ + +R FG + FV++ DR+
Sbjct: 559 FNLEVYMKLLTFKKDLLKHRMFGRKKYFVRIDIKSCYDRI 598
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -3
Query: 415 ENSTLFPVEVDLSQNCFQYKSAGQISEDVQDE---DIEYAKEIQEYHDLSVNDTREA 254
ENS + E + S + ++ + G+ S Q D K+I EY+D S + REA
Sbjct: 15 ENSKINSDEFEDSMDVTEFNNPGEESTYPQANSWNDSNKTKDIAEYYDYSWSGQREA 71
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 733 LTIRKYADTKFEYLSYCLKVKEMDDEEYGYNA 638
LT+ KY D +F YCL GYN+
Sbjct: 33 LTLGKYGDVRFGVFGYCLN-SNCSKPLVGYNS 63
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 488 RRPSTQEVHSGTGRLPQRNLGAFNGEFY 405
RR TQ +HS + +LP+ + N EF+
Sbjct: 10 RRTDTQYLHSVSSKLPKVDFDTNNEEFF 37
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 422 MLQGFVVVNGQSLNELLELMGD 487
++ FV+ N ++L E LEL+GD
Sbjct: 339 LIHKFVLNNAEALKESLELLGD 360
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 337 EDVQDEDIEYAKEIQEYH--DLSVNDTREAKLMKKRQTDDNEHNDATEQ 197
+ +Q+E +E+ K Q+ D+S++D E + KK++ D + ++Q
Sbjct: 908 QKMQEEVLEWRKSQQKASEDDMSLSDDEEKQSGKKKKKDRKKRKSKSKQ 956
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = -3
Query: 454 LAVYHNETLEHLMENSTLFPVEVDLSQNCFQYKSAGQISEDVQDEDIEYAKEIQEYHDLS 275
+ V +T E +E + L+ D+ ++ Y++ E ED++ +E E
Sbjct: 491 MMVSRMKTQEQSIELTRLYKQLQDIEED---YENKLMRMEQQWREDVDQLQEYVEEITQE 547
Query: 274 VNDTREAKLMKKRQTDDNE 218
+ DT+E +++DD E
Sbjct: 548 LQDTKEVLSKSSKESDDYE 566
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 649 RIPRHPSL*PSDSRTDTRISCPRISLSSIWCPV*LCS 759
++PRHP + S DT +IS+SS C CS
Sbjct: 76 QLPRHPFAKIASSYIDTHTLFFQISISSFLCRFSNCS 112
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 9.4
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Frame = -3
Query: 436 ETLEHLMENSTLFPVEVDLSQNCFQYKSAGQISEDVQDEDIEYAKEIQEYHD-LSVNDTR 260
ET +++ E + + + S+ C + + I + + IEY K++QE D L
Sbjct: 926 ETSKNMEEYERIDAMAKEQSRICQKLEKELSIIQLTYNSRIEYYKQLQEISDSLMPPPVS 985
Query: 259 EAKLMKKRQTDDNEHNDATEQLLPGIDTVDIDRSENNDVSDNLTLLTEL 113
L + D+ + ++ ++ + SE D + T + EL
Sbjct: 986 NISLNNYVKDDEKKQKFLNSVIIKASVILEKEISEKQDEASQTTNVAEL 1034
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = -3
Query: 436 ETLEHLMENSTLFPVEVDLSQNCFQYKSAGQISEDVQDEDIEYAKEIQEYHDLSVNDTRE 257
E +E L +N F V +++ +ISE ++ E E+ S N ++
Sbjct: 663 ENIEKLKQNDDHFEVTEEITSTI-----NSKISEKQENNVAETILEVTSSPKSSENSQKQ 717
Query: 256 AKLMKKRQTDDNE 218
+++ KKR D+ +
Sbjct: 718 SEITKKRGRDEED 730
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,990
Number of Sequences: 5004
Number of extensions: 61762
Number of successful extensions: 260
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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