Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14b22
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0146 - 31976538-31978643,31978653-31978751 34 0.15
01_07_0047 + 40731508-40731714,40731834-40731893,40731992-407321... 33 0.26
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043... 32 0.45
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 31 0.79
11_06_0372 + 22781438-22781977 31 1.0
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 30 1.8
07_03_0584 - 19690474-19690589,19690763-19690909,19691068-196911... 30 2.4
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774... 30 2.4
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768... 30 2.4
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 3.2
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 29 3.2
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 3.2
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 29 4.2
11_06_0404 - 23153454-23154305,23154335-23155627 29 5.6
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693... 29 5.6
11_04_0091 - 13392864-13392950,13393534-13393579,13393706-133938... 28 7.4
11_01_0214 - 1682731-1682744,1683597-1683640,1684284-1684372,168... 28 7.4
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867... 28 7.4
07_01_0223 - 1642553-1643676,1643725-1644541 28 7.4
08_01_0626 - 5445676-5446687,5447099-5447430 28 9.8
>03_06_0146 - 31976538-31978643,31978653-31978751
Length = 734
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/99 (23%), Positives = 43/99 (43%)
Frame = -3
Query: 343 ISEDVQDEDIEYAKEIQEYHDLSVNDTREAKLMKKRQTDDNEHNDATEQLLPGIDTVDID 164
+S D D D + + +Y D+ E + + Q+DD E + E G D +D +
Sbjct: 405 VSYDDIDTDSDMEIDGGKYDDIDSESLYEEESVSDEQSDDEE--EPEEFAGGGYDDIDYE 462
Query: 163 RSENNDVSDNLTLLTELGLADAGANDEFGSFQNGLMDDF 47
+D + L +L + G+ + +E + +MD F
Sbjct: 463 SLNGDDFEEYLQVLADGGIDNENFGEEESVLDDEVMDFF 501
>01_07_0047 +
40731508-40731714,40731834-40731893,40731992-40732159,
40732198-40732203,40732898-40732961,40733395-40733690,
40733799-40733903,40734030-40734066,40734309-40734403,
40735226-40735282,40735361-40735438,40735527-40735586
Length = 410
Score = 33.1 bits (72), Expect = 0.26
Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 2/131 (1%)
Frame = -3
Query: 469 KFIQGLAVYHNETLEHLMENSTLFPVEVDLSQNCFQYKSAGQISEDVQDEDIEYAKEIQE 290
KF + A +E L+E + + +++ + S+ + + D+D EY + +
Sbjct: 135 KFFESTAA-EASAVEGLIEIREEYDEDTEINSSTLDASSS---ASGMPDKDREYTQIMAR 190
Query: 289 YHDLSVNDTREAKLMKKRQTDDNEHNDATEQLLPGIDTVDIDRSENNDVSDNLTLLTELG 110
+L + + ++ DD + D E P D + + EN + DN LG
Sbjct: 191 LDELEMEENDAGSTSEEDGEDDEDDEDDEEDAGPSEDDKEDEEEENILIDDNDHHNASLG 250
Query: 109 --LADAGANDE 83
+ +G ND+
Sbjct: 251 ASFSGSGGNDQ 261
>12_02_0761 -
22901121-22901917,22902111-22902707,22904282-22904358,
22906543-22907135,22907552-22908118,22908431-22908958,
22909115-22909432,22910622-22910656,22910986-22911301
Length = 1275
Score = 32.3 bits (70), Expect = 0.45
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 97 PRPPALALSGVSSCPKRHYSRTCQCQRCRYPGEA 198
P+ P L SGV P+R + RTC+ Q+ + A
Sbjct: 777 PKKPILKTSGVGGLPRRAFGRTCRNQKFKQQAHA 810
>03_02_0199 -
6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 31.5 bits (68), Expect = 0.79
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -3
Query: 211 DATEQLLPGIDTVDIDRSENNDVSDNLTLLTELGLADAGAN 89
D + QLLP ++T+D+ R++ V DNL T+L D G N
Sbjct: 191 DESLQLLPAVETLDLSRNQFAKV-DNLRKCTKLRNLDLGFN 230
>11_06_0372 + 22781438-22781977
Length = 179
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Frame = -3
Query: 415 ENSTLFPVEVDLSQNCFQYKSAGQISEDVQDEDI-EYAKEIQEYHDLSVNDTREAKLMKK 239
+N FP E L +C I V D+ EY E++ + S +A ++
Sbjct: 75 DNDDGFPEE--LKASCRDSIRRSNILRKVADDRFFEYQSEVRAAMESSGRFLVDAGFFER 132
Query: 238 RQTDDNEHNDATEQLLPGIDTVDIDRSENNDVSDNLTLLTELGL 107
R + N+A +L G+ D D + + +++ LL +GL
Sbjct: 133 RARGRAKLNEAWAKLRDGLPLSDSDSDADEEDDEDMALLAAMGL 176
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = -3
Query: 349 GQISEDVQDEDIEYAKEIQEYHDLSVNDTREAKLMKKRQTDDNEHNDAT-----EQLLPG 185
G ED D + +E+ E D+S ND+ E + +D +E ND + E+L
Sbjct: 530 GMKEEDQLSGDEDDTEELDEDQDISDNDSEENDDELELDSDMDEENDVSESDDDEELSEK 589
Query: 184 IDTVDIDRSENNDVSD 137
+D D + S+ +D SD
Sbjct: 590 LDDSD-EGSDQDDDSD 604
>07_03_0584 -
19690474-19690589,19690763-19690909,19691068-19691116,
19691240-19691365,19691473-19692651
Length = 538
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/90 (22%), Positives = 37/90 (41%)
Frame = -3
Query: 388 VDLSQNCFQYKSAGQISEDVQDEDIEYAKEIQEYHDLSVNDTREAKLMKKRQTDDNEHND 209
V L+ CFQ A + D+Q + + I E + + + KL DD+E
Sbjct: 132 VFLTAECFQSHVADEFFPDLQRSPLLVPERISEEQEAELIGSCAVKLAPSDDDDDDESER 191
Query: 208 ATEQLLPGIDTVDIDRSENNDVSDNLTLLT 119
++ + + ++ + D+ DNL T
Sbjct: 192 FLSKIKSTLQRIKDRKALSVDLLDNLVEFT 221
>06_01_0996 +
7746358-7746493,7747102-7747262,7747586-7747647,
7748142-7748595,7748994-7749134,7749444-7749633,
7749842-7750530,7750605-7750804,7751210-7751375,
7751850-7752046,7752162-7752396
Length = 876
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -3
Query: 328 QDEDIEYAKEIQE--YHDLSVNDTREAKLMKKR-QTDDNEHNDATEQLLPGIDTVDIDRS 158
QDED++ E D V DT E + + +DD+E + G + D DRS
Sbjct: 377 QDEDLDVTSSDDEDFVADEEVEDTEEDEYTDEDGDSDDDEDEGEEDDNDEGEEDDDEDRS 436
Query: 157 ENND 146
EN+D
Sbjct: 437 ENDD 440
>02_04_0480 -
23274945-23275196,23275558-23275623,23276709-23276851,
23276947-23277063,23277219-23278683,23279561-23280730
Length = 1070
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 340 SEDVQDEDIEYAKEIQEYHDLSVNDTREAKLMKKRQTDDNEHNDATEQ 197
S+D++D D E K+ HD+ N +A K++ +DD D E+
Sbjct: 62 SDDMRDGDFEEKKKCSR-HDMKKNLRNDANEEKRKSSDDMRDGDDEEK 108
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 569 RRQNKVRQTQVGRSGKAGASRE*ESAGRRPSTQEVHSGTGRLPQRNLG 426
R K ++ + G AG +E E AGRR + +E G G+ +R G
Sbjct: 39 RGAGKRKRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGG 86
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 551 RQTQVGRSGKAGASRE*ESAGRRPSTQEVHSGTGRLPQRNLG 426
R+ + G AG +E E AGRR + +E G G+ +R G
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGG 50
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = -3
Query: 259 EAKLMKKRQTDDNEHNDATEQLLPGIDTVDIDRSENNDVSDNLTLLTELGLADAGAND 86
E+K + K N + + ++L D IDRS S++ + E+G +D D
Sbjct: 1061 ESKGVNKESEQTNAASASPTEMLKAADASSIDRSSARSTSESTENVQEVGKSDVAIGD 1118
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/70 (21%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -3
Query: 349 GQISEDVQDEDIEYAKEIQEYHDLSVNDTREAKLMKKRQTDDNEHNDATEQLL--PGIDT 176
GQ ED+++ +++ ++ E + D K ++ QTD+ +H+D + +++
Sbjct: 1942 GQQDEDMKNVNLDQQQKEDEEIEKQKEDEEIEKQKEELQTDEQKHDDKRVDFIIDTQVES 2001
Query: 175 VDIDRSENND 146
+D ++E D
Sbjct: 2002 IDAFQAEQTD 2011
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = -3
Query: 364 QYKSAGQISEDVQDEDIEYAKEIQE---YHDLSVNDTREAKLMKKR-QTDDNEHNDATEQ 197
Q K A + QDED++ E + V DT+E + + +DD+E +
Sbjct: 201 QKKLAQRTKRVQQDEDLDVTSSDDEDFVADEEEVEDTKEDEYTDEDGDSDDDEDEGEEDD 260
Query: 196 LLPGIDTVDIDRSENND 146
G + D DRSEN+D
Sbjct: 261 DDEGEEDDDEDRSENDD 277
>11_06_0404 - 23153454-23154305,23154335-23155627
Length = 714
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/101 (17%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Frame = -3
Query: 364 QYKSAGQISEDVQDEDIEYAKEIQE-----YHDLSVNDTREAKLMKKRQTDDNEHNDATE 200
Q + A Q+ + + D+E A E +E +D+ + ++ + Q ++E +
Sbjct: 593 QNQPAEQVLQQAAEADVEIADEAREDEPEPGNDIHAQSAADMEITDEAQEGESEPGSNVQ 652
Query: 199 QLLPGIDTVDIDRSENNDVSDNL--TLLTELGLADAGANDE 83
G++ +D + E ++ +N+ ++ +AD +E
Sbjct: 653 TSAAGVEIIDEAQEEESEPGNNVHTPFSADVEIADQAQEEE 693
>05_05_0336 +
24167891-24167982,24168501-24168600,24169216-24169375,
24170119-24170566,24171020-24171095,24171204-24171250,
24171345-24171528
Length = 368
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = -3
Query: 346 QISEDVQDEDIEYAKEIQEYHDLSVNDTRE-AKLMKKRQTDDNEHNDATEQLLP-GIDTV 173
++ + +++E+I+ A E +EY L + R+ ++KK+ T+ P G+D +
Sbjct: 283 EVDDRLEEEEIDAAAEREEYLTLEQEEYRQRVDMLKKQLTESKAARTTKANSKPVGMDML 342
Query: 172 DIDRSENNDVSDN 134
S +++ D+
Sbjct: 343 SSSDSSSDEEDDS 355
>11_04_0091 -
13392864-13392950,13393534-13393579,13393706-13393819,
13394135-13394256,13394360-13394431,13395663-13395812,
13399258-13399341,13399459-13399560,13399634-13399671,
13399762-13399864,13399978-13400389,13400493-13400671
Length = 502
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 452 QSLNELLELMGDVLRFLIL*KLQLYQNVRPESG 550
Q+LN ELMG+V IL K +Y + +P+ G
Sbjct: 299 QALNRFSELMGEVSEAHILYKKCIYVSPKPDDG 331
>11_01_0214 -
1682731-1682744,1683597-1683640,1684284-1684372,
1684461-1684505,1685044-1685073,1685189-1685296,
1685380-1685465,1686180-1686267,1687494-1687694,
1687885-1687960,1688040-1688089,1688180-1688242,
1688322-1688398,1688893-1688953,1689377-1689417,
1690005-1690086
Length = 384
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +2
Query: 146 VIILGPVNVNGVDTREKLFGSVIVLIVVRLTFLHQLRLSRVVNRQIVVLLYFFCVFYIFI 325
V +LG +N + V + I+ +T+L + LS VVN ++ F C +++
Sbjct: 262 VKVLGIINTSRVAV---ILSMAILCSYPPMTYLSRPWLSIVVNIASMLKNNFVCKLPVYM 318
Query: 326 LDVLTNLTCRFILK 367
+ +T TC FIL+
Sbjct: 319 VVQVTINTCSFILQ 332
>08_02_0157 -
13385589-13385675,13386187-13386357,13386572-13386792,
13390090-13390240,13390682-13390726,13391121-13391330
Length = 294
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -3
Query: 700 EYLSYCLKVKEMDDEEYGYNALQEPLYRVETGNYEYRLILRCRQDARTRFARLRSD 533
E Y K +E+ DE+ QE + +E NY ++LR Q + R D
Sbjct: 237 ERQDYDAKNQELQDEKQRIAEFQEQVRNLELNNYRLSMLLRQAQQGSSIPGRFNPD 292
>07_01_0223 - 1642553-1643676,1643725-1644541
Length = 646
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -3
Query: 241 KRQTDDNEHNDATEQLLPGIDTVDIDRSENNDVSDNLTLLTELGLADAG-ANDEFGSFQN 65
K D N H A E L + D+ NN + N+ L + DAG +D+ G F+N
Sbjct: 123 KNNGDPNNHIFAIE--LDTVQNDDLQDISNNHIGININSLYSMKSRDAGFYDDKSGDFKN 180
>08_01_0626 - 5445676-5446687,5447099-5447430
Length = 447
Score = 27.9 bits (59), Expect = 9.8
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = -3
Query: 337 EDVQDEDIEYAKEIQEYHDLSVNDTREAKLMKKRQTDD----NEHNDATEQLLPGIDTVD 170
ED + ++E+ E + HD +D E + ++ + D+ +E+ D E + ++
Sbjct: 178 EDAMESEMEHEMEHEMMHD--DDDDEEEEEEEEEEEDEFLYEDENVDDDEDEGEEDEEIE 235
Query: 169 IDRSENNDVSDNLTLLTELGLADAGANDEFGSFQNGLMDD 50
D ENND D + E D ND ++ MD+
Sbjct: 236 EDEDENNDDDDEEEEMEEDEDLDEDKNDVVEEEEDEDMDE 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,550,025
Number of Sequences: 37544
Number of extensions: 408643
Number of successful extensions: 1258
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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