Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b22
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-41|CAB16523.1|  444|Caenorhabditis elegans Hypothetical p...   145   3e-35
Z78200-4|CAB01582.1|  289|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    30   2.2  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    29   5.0  
Z82286-3|CAB05309.1|  781|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U53149-3|AAM29665.1|  153|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U53149-2|AAM29664.1|  451|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z99281-41|CAB16523.1|  444|Caenorhabditis elegans Hypothetical
           protein Y57G11C.22a protein.
          Length = 444

 Score =  145 bits (352), Expect = 3e-35
 Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 5/208 (2%)
 Frame = -3

Query: 784 ILXDMGTYLNKAIPDTKLTIRKYADTKFEYLSYCLKVKEMDDEEYGYNALQEPLYRVETG 605
           ++ D+  Y++  +PDT+LTI+KY D K+EYLSYCLK+KEMDDEE  + A+QEPLYRVETG
Sbjct: 227 MVSDLQVYIDHVVPDTRLTIKKYLDVKYEYLSYCLKLKEMDDEEVEFVAIQEPLYRVETG 286

Query: 604 NYEYRLILRCRQDARTRFARLRSDXXXXXXXXXXXKAQDVAHQLKKFIQGLAVYHNETLE 425
           NYEYR++LRCRQ+ R RF ++R D             +D+A  L  F + +A    E  E
Sbjct: 287 NYEYRVMLRCRQECRARFMKMRDDVMVKIELLDQKHVRDIAQHLAIFAKTMAKCQQECAE 346

Query: 424 HLMENSTLFPVEVDLSQ-NCFQYKSAGQIS--EDVQDEDIEYAKEIQEYHDLSVNDTREA 254
            L E   + P+E+DL Q N     S G+ +  E++  + I       E   + VND   +
Sbjct: 347 ILKERIDV-PIEIDLEQLNLNMNTSDGKANGEEEMGQDAIVLNDNPLEGDLIDVNDIGSS 405

Query: 253 KLMKKRQTD--DNEHNDATEQLLPGIDT 176
               + +     +  ND ++ LL   D+
Sbjct: 406 TEFNEPRISLRRDSQNDTSQPLLGAPDS 433


>Z78200-4|CAB01582.1|  289|Caenorhabditis elegans Hypothetical
           protein T04H1.5 protein.
          Length = 289

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -3

Query: 790 KPILXDMGTYLNKAIPDTKLTIRKYADTKFEYLSYCLKVKEMDDEEYGY-NALQEPLYRV 614
           + +  ++   + K +P      R Y   + E  SY  KV++ +DEEY Y N L  P    
Sbjct: 173 RKVCEELDHRIGKKVPSVSWFWRSYKVAQEETTSYHKKVEK-EDEEYKYSNGLAAP---- 227

Query: 613 ETGNYEYRLILRCRQDA 563
           E  NY++ +     ++A
Sbjct: 228 EDPNYDFTMSTEILEEA 244


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 127 VSSCPKRHYSRTCQCQRCRYPGEAV 201
           ++SCP R Y RT +C  C    E V
Sbjct: 22  LNSCPYRRYGRTIRCSSCGIENEGV 46


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 127 VSSCPKRHYSRTCQCQRCRYPGEAVR*RHC 216
           V  C    +   C C RCR PG+ VR R C
Sbjct: 812 VGKCEWSEWGEWCGCMRCR-PGKEVRRRFC 840


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 127 VSSCPKRHYSRTCQCQRCRYPGEAVR*RHC 216
           V  C    +   C C RCR PG+ VR R C
Sbjct: 812 VGKCEWSEWGEWCGCMRCR-PGKEVRRRFC 840


>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 553 TLFWRLGDNAISTYIHNSRFPLGTEAPAERYTRIPRHPSL 672
           +L W  G  AI + I+  RF L  E  AER  ++ +   +
Sbjct: 250 SLSWEKGHGAIGSLINTGRFFLSPEQRAERIIKVTKEADI 289


>Z82286-3|CAB05309.1|  781|Caenorhabditis elegans Hypothetical
           protein W02A2.6 protein.
          Length = 781

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -3

Query: 397 PVEV-DLSQNCFQYKSAGQISEDVQDEDIEYAKEIQ--EYHDLSVNDTREAKLMKKRQTD 227
           P EV D+ + C+       +S+D +DED E  +E +  +   LS N   E  L+ + Q  
Sbjct: 502 PPEVRDMFKACYNQAVGSPVSDDEEDEDEEEEEEYKYAKVCLLSPNRIVEDTLLLEEQPR 561

Query: 226 DNEHNDATEQLLP 188
             E   +T+ + P
Sbjct: 562 QPEEFPSTDNINP 574


>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 179 VDTREKLFGSVIVLIVVRLTFLHQLRLSRVVNRQIVVLLYFFC 307
           V + E   GS+  L+   + F    R+S+V + Q+ +   FFC
Sbjct: 583 VSSLETFLGSITFLLDPIINFSFDKRISKVFSSQVSMFSIFFC 625


>Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical
           protein R06F6.9 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = -3

Query: 349 GQISEDVQDEDIEYAKEIQEYHDLS-VNDTREAKLMKKRQTDDNEHNDATEQLLPGIDTV 173
           G ISE+           I+   ++  ++ TRE K+ K       + N  T ++  GI   
Sbjct: 103 GLISEEASAAPEPTGPSIEGLENVDGLSVTREGKVFKIALNRPKKFNALTLEMYQGIQKA 162

Query: 172 DIDRSENNDVSDNLTLLTELGLADAGAND 86
            ++ S NND S ++T++T  G      ND
Sbjct: 163 -LEVS-NNDKSTSITVITANGSYYCAGND 189


>U53149-3|AAM29665.1|  153|Caenorhabditis elegans Hypothetical
           protein C24B5.2b protein.
          Length = 153

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = -3

Query: 358 KSAGQISEDVQDEDI-----EYAKEIQEYHDLSVNDTREAKLMKKRQTDDNEHNDATEQL 194
           K AG I E ++  ++        KE  E++ + + +TR +++  KRQ        A ++L
Sbjct: 39  KHAGSIQEKLRTAELYKEARSLLKEANEFNIMDIPETRRSEIRDKRQNMMKLEKSAQDRL 98

Query: 193 LPGIDTVD 170
           +   + VD
Sbjct: 99  IAICNEVD 106


>U53149-2|AAM29664.1|  451|Caenorhabditis elegans Hypothetical
           protein C24B5.2a protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = -3

Query: 358 KSAGQISEDVQDEDI-----EYAKEIQEYHDLSVNDTREAKLMKKRQTDDNEHNDATEQL 194
           K AG I E ++  ++        KE  E++ + + +TR +++  KRQ        A ++L
Sbjct: 39  KHAGSIQEKLRTAELYKEARSLLKEANEFNIMDIPETRRSEIRDKRQNMMKLEKSAQDRL 98

Query: 193 LPGIDTVD 170
           +   + VD
Sbjct: 99  IAICNEVD 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,759,673
Number of Sequences: 27780
Number of extensions: 356680
Number of successful extensions: 1387
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)