Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b22
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   7.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.9  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   9.9  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -3

Query: 343 ISEDVQDEDIEYAKEIQEYHDLSVNDTREAKLMKKRQTDDNEHNDATEQLLPGIDTVD 170
           IS D  D D EYA   Q     SV +T         + D +E + AT+Q    ID +D
Sbjct: 74  ISSDHDDSDEEYAANSQPPRITSVPNT--------SRLDKSEISLATKQACGFIDNID 123


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = -3

Query: 337 EDVQDEDIEYAKEIQEYHDLSVNDTREAKLMKKRQTDDNEHNDATEQLLPGIDTVDIDRS 158
           ED++ +DI+         D+      E +  KK   D  +      QL  GID +D  + 
Sbjct: 297 EDMEYDDIKTELSTGMNDDIPPETEEEEENDKKLDLDSIDMMQLPIQLDDGIDILDDVKC 356

Query: 157 ENNDV 143
           E+  V
Sbjct: 357 EDERV 361


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -3

Query: 346 QISEDVQDEDIEYAKEIQEYHDLSVNDTREAKLMKKRQTDDNEHND 209
           Q+   V D D+E  K+I+   D+      +++L   +     EH +
Sbjct: 166 QVQLLVSDSDVESYKQIKSDLDVLRQSVEKSELWVYKSKASEEHGN 211


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 394 LGTM*NSPLNAPRFRCGKRP 453
           LGT+    + AP FRC +RP
Sbjct: 108 LGTL-YPGMRAPSFRCTERP 126


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 394 LGTM*NSPLNAPRFRCGKRP 453
           LGT+    + AP FRC +RP
Sbjct: 108 LGTL-YPGMRAPSFRCTERP 126


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 375 CERSTSTGNNVEFS 416
           C + +STG +VEFS
Sbjct: 24  CLQESSTGQSVEFS 37


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -3

Query: 346 QISEDVQDEDIEYAKEIQEYHDLSVNDTREAKLMKKRQTDDNEH 215
           Q+   V D D+E  K+I+   D+      +++L   +     EH
Sbjct: 134 QVQLLVSDSDVESYKQIKSDLDVLRQSVEKSELWVYKSKASEEH 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,640
Number of Sequences: 438
Number of extensions: 4414
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)