Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14b20
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 30 0.37
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 29 0.49
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 0.65
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 28 1.1
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 27 2.0
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 27 2.0
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 27 2.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 4.6
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 6.1
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 26 6.1
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 25 8.0
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 29.9 bits (64), Expect = 0.37
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = -3
Query: 576 SLNAILVNGGRKLRNQADKTDMA---LAETVALTSEXCTKLEEMLRNTLQRIADMENLID 406
S N N +L+NQ D L E + + ++ TKL E L N ++ME +
Sbjct: 450 SHNTYRQNNLEELKNQNDYLTSQITNLEEGMVMLNKENTKLSEALSNHRVTRSEMEEATE 509
Query: 405 NLKDSVRKMDAAMKLAQTRLDNR 337
LK++ + A ++ L+NR
Sbjct: 510 ILKNNSADLKAQLEKQPQELENR 532
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 29.5 bits (63), Expect = 0.49
Identities = 18/84 (21%), Positives = 36/84 (42%)
Frame = -3
Query: 447 NTLQRIADMENLIDNLKDSVRKMDAAMKLAQTRLDNRNNWRPHGESVRDQPHLGXIXEVK 268
N+ + D L+DN D + ++ K + D+R + R + +R++
Sbjct: 120 NSTNNLRDRPALMDNAMDELEELSTLAKTRRNDRDSRRDERHYLNGIRERRERSISPSFS 179
Query: 267 XIHETVTSLLGQLRNAERVREDLM 196
H + TS+ GQ ++ R L+
Sbjct: 180 --HHSRTSISGQSHSSRSSRGPLL 201
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.1 bits (62), Expect = 0.65
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = -3
Query: 273 VKXIHETVTSLLGQLRNAERVREDLMRKRIDLEKDIASKRKTLN 142
V+ +HE ++SL Q+ A+ E L ++ +E+D+A+K+ ++
Sbjct: 897 VEVVHERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEIS 940
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 28.3 bits (60), Expect = 1.1
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 2/175 (1%)
Frame = -3
Query: 675 GDYSAPLEYWEYFCRDNVQICEAARQKSADLRGSLNAILVNGGRKLRNQADKTDMALAET 496
G+ + L Y EY + N +A SA+L+ N + +K Q T + +
Sbjct: 14 GEEAEKLVY-EYLRKTNRPY--SATDVSANLK---NVVSKQVAQKALEQLRDTGLIHGKL 67
Query: 495 VALTSEXCTKLEEMLRNTLQRIADMENLIDNLKDSVRKMDAAMKLAQTRLDNRNNWRPHG 316
S +++ T + +A+ME I LKD V + K L NN
Sbjct: 68 YGKQSVFVCLQDDLAAATPEELAEMEKQIQELKDEVSVVKTLYKEKCIELQALNNSLSPA 127
Query: 315 ESVRDQPHLGXIXEVKXIHETVTSLLGQLRN--AERVREDLMRKRIDLEKDIASK 157
E +R++ I + E +S L LRN +++ ++ M+K D D A K
Sbjct: 128 E-IREK-----IQSIDKEIEETSSKLESLRNGTVKQISKEAMQK-TDKNYDFAKK 175
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 302 SLTLSPCGLQLFLLSSLVWANFMAASIFLTESFRLSIKFSISAIL 436
S TL P L +L + A +A S+F T +FR+S+ ++++ IL
Sbjct: 302 SATL-PRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRIL 345
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 405 NLKDSVRKMDAAMKLAQTRLDNRNNW--RPHGES 310
NL+ K DA +KL + +L N+W HG+S
Sbjct: 36 NLRPVEEKFDAVIKLDEKQLSEMNDWCIEQHGKS 69
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 480 RMSRPQFPPKPCLFCRPGFLAFD 548
R S + P+ CLFC F +FD
Sbjct: 199 RRSSQRLSPRDCLFCAASFSSFD 221
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.2 bits (55), Expect = 4.6
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 14/172 (8%)
Frame = -3
Query: 558 VNGGRKLRNQADKTDMALAETVALTSEXCTKLEEMLRNTLQRIA----DMENLIDNLKDS 391
+ G ++ + K D A E K+E + +L+RI+ +E L + ++
Sbjct: 190 IKGLKRDQETQVKVDQATLTHYRSDKERAEKIELRVHESLKRISCIRSKVEELDQEITET 249
Query: 390 VRKMDAAMKLAQTRLDNRNNWRPHGESVRD--QPHLGXIXEVKXIHETVTSLLGQLRN-- 223
R D K + R H ES D + + I + + L +L +
Sbjct: 250 ARLQDELFKSTEEYEQQMITIR-HLESQSDIINTTINDLKSQMTITDESSEDLEKLHSNF 308
Query: 222 AERVRED------LMRKRIDLEKDIASKRKTLNIDRERXGMVRSHYPSASEL 85
AE+V+E+ L +KR DLE + S+R+ L G ++ S +L
Sbjct: 309 AEKVKEEQELYKSLEKKRSDLESLLKSRRELLEKLTGDLGKIQGEIESLEKL 360
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = -3
Query: 540 LRNQADKTDMALAETVALTSEXCTKLEEMLRNTLQRIADMENLIDNLKDSVRKMDAAMKL 361
L +Q D+ LA ++ +E L + ++ + A +++ I+N+KD + + + A+
Sbjct: 441 LESQGDRMSQLLANITSI-NERKENLTDKRKSLWREEAKLKSSIENVKDDLSRSEKALGT 499
Query: 360 AQTR 349
R
Sbjct: 500 TMDR 503
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 506 KAMSVLSAWFLSFRPPFTKIAFKLPRKS 589
+A+S + + L+ + F K ++KLPRKS
Sbjct: 5 QALSGIRRFSLATKQSFVKTSYKLPRKS 32
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 633 RDNVQICEAARQKSADLRGSLNAILVNGGRKLRNQADK 520
R VQ+ A R +A L+ SLN ++GGR R Q K
Sbjct: 156 RGVVQLFNAVR--TAQLQSSLNRENISGGRTAREQKVK 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,279
Number of Sequences: 5004
Number of extensions: 49573
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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