Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14b20
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 31 0.90
12_01_0856 + 8034181-8035425 30 1.6
06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941... 30 1.6
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 30 1.6
03_06_0676 - 35460281-35460648,35462097-35462382 30 2.1
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 29 4.8
09_02_0461 + 9577003-9577065,9577471-9577568,9578339-9578394,957... 28 6.3
03_02_0450 + 8600078-8600351,8600944-8601037,8601094-8601241,860... 28 6.3
07_03_1652 - 28409097-28409165,28409788-28409911,28410317-284105... 28 8.4
07_01_0773 + 5963165-5963306,5963440-5963489,5963580-5963645,596... 28 8.4
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876... 28 8.4
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 31.1 bits (67), Expect = 0.90
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Frame = -3
Query: 540 LRNQADKTDMALAETVALTSEXCTKLEEMLRNTLQRIADMENLIDNLKDSVRKMDAAMKL 361
L NQ +++ A +E +AL E L +L ++ + + + + D + K + +
Sbjct: 403 LDNQMNRSKDAASEALALREE-ADYLRTLLAKKIETLDQEKQELQFIVDMLGKECSESRA 461
Query: 360 AQTRLDNRNNWRPHGESVRD--QPHLGXIXEVKXIHETVTSLLGQLRNAERVREDLMRKR 187
++ N R E +R + H VK +E T+ +L AE EDL K
Sbjct: 462 ISEIEESENRARKQAEYLRKCLEEH-NLELRVKAANEAETACQQRLSIAEAELEDLRAKV 520
Query: 186 IDLEKDIASKRKTLNI 139
E+D+ ++++ I
Sbjct: 521 DASERDVMKLKESIRI 536
>12_01_0856 + 8034181-8035425
Length = 414
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 474 CTKLEEMLRNTLQRIADMENLIDNLKDSVRKMDAAMKLAQTRLD 343
C K EE L++ ++ AD I LKD+VR ++L ++ +D
Sbjct: 101 CQKTEEQLQSLPKKQADQYKRITKLKDAVRSALDLLQLQKSSID 144
>06_01_1137 +
9412230-9412378,9412549-9412634,9413417-9413496,
9413826-9413881,9414038-9414086,9414692-9414841,
9414993-9415088,9415442-9415555,9415655-9415785,
9416171-9416408,9416603-9416656,9417100-9417117,
9417906-9418722,9418797-9418846
Length = 695
Score = 30.3 bits (65), Expect = 1.6
Identities = 30/145 (20%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Frame = -3
Query: 543 KLRNQADKTDMALAETVA---LTSEXCTKLEEMLRNTLQRIADMENLIDNLKDSVRKMDA 373
K+ N + D A+ ++ LT T++ + T Q + ++ENL + L DS+R+
Sbjct: 222 KITNMKKEIDAIRAKDISQGGLTQGQQTQIARNEQRTSQLMEELENLEETLNDSIRESLG 281
Query: 372 AMKLAQTRLDNRNNWRPHGESVRDQPHLGXIXEVKXIHETVTSLLGQLRNAER---VRED 202
A+T NR + H S+ ++ + + + ++ +++E+ +
Sbjct: 282 ----ARTGNSNRGS---HKASLEEEDDI--LSDEDDFYDRTKKKSSSHKSSEQQVETADS 332
Query: 201 LMRKRIDLEKDIASKRKTLNIDRER 127
L+ K+ + DI SK+K + ++ +
Sbjct: 333 LLDKKDTITSDIESKKKLVEEEKNK 357
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = -3
Query: 468 KLEEMLRNTLQRIADMENLIDNLKDSVRKMDAAMKLAQTRLDNRNNWRPHGESVRDQPHL 289
K++ L LQR+ D+ENL N + +++ D K+A+ R++ R E + L
Sbjct: 1438 KIKMDLLAMLQRVKDVENL--NRNEKMQRKDMEEKIARQRMEIEETKRQRDELYHE---L 1492
Query: 288 GXIXEVKXIHETVTSL--LGQLRNAERVREDLMRKRIDLEKDIASKRK 151
+ E K E + S + R AE ++K DLE ++ K
Sbjct: 1493 KDVKEQKLCLERLDSSKETKRRRKAESEMLSALKKVHDLEHQYLNELK 1540
>03_06_0676 - 35460281-35460648,35462097-35462382
Length = 217
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/88 (21%), Positives = 38/88 (43%)
Frame = -3
Query: 414 LIDNLKDSVRKMDAAMKLAQTRLDNRNNWRPHGESVRDQPHLGXIXEVKXIHETVTSLLG 235
+ID L +RK+ K A T + + R++ E+K +H+ + L
Sbjct: 104 VIDRLHHYLRKLITLRKAANTSREEVEKLQMENRLFREKEEKSS-SEIKKLHQEIAKLNE 162
Query: 234 QLRNAERVREDLMRKRIDLEKDIASKRK 151
++ + ED RK ++ E + + +K
Sbjct: 163 SMKKLKSESEDHERKVLEAEAHVNALQK 190
>09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 28.7 bits (61), Expect = 4.8
Identities = 26/162 (16%), Positives = 65/162 (40%), Gaps = 2/162 (1%)
Frame = -3
Query: 612 EAARQKSADLR-GSLNAILVNGGRKLRNQADKTDMALAETVALTSEXCTKLEEMLRNTLQ 436
E R + D R +L + + G K+ ++ + CT L E +
Sbjct: 604 EVGRSVAFDNRIQNLKDVYTSDGYKMFSRGPVQTILPPHRKGNAGRLCTSLGEKIAEMES 663
Query: 435 RIADMENLIDNLKDSVRKMDAAMKLAQTRLDNRNNWRPHGESVRDQPHLGXIXEVKXIHE 256
IADME +I ++K + + + ++ N R E + + + + +++
Sbjct: 664 EIADMERIISQRTRDMKKPNDKREDIELKIKNLKRKRVEEERLLESKKV-QLDDIRKTSA 722
Query: 255 TVTSLLGQLRNAERVREDLMRKRIDLE-KDIASKRKTLNIDR 133
+ + + + ++M+ +D+E K++ ++ L + +
Sbjct: 723 DINRVTSS--DTSELEAEMMQVEVDIEQKELLVQKTNLRLTK 762
>09_02_0461 +
9577003-9577065,9577471-9577568,9578339-9578394,
9578446-9578672,9578956-9579045
Length = 177
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 596 FCLAASQICTLSRQKYSQYSKGAL*SPNLXDPGRN 700
F + + T++R KY + +K + PNL +PG N
Sbjct: 17 FSMCQHFVITVTRTKYKEPTKALIYWPNLSNPGGN 51
>03_02_0450 +
8600078-8600351,8600944-8601037,8601094-8601241,
8602226-8602396,8602779-8602958,8603148-8603177,
8603925-8604707
Length = 559
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/84 (23%), Positives = 38/84 (45%)
Frame = -3
Query: 432 IADMENLIDNLKDSVRKMDAAMKLAQTRLDNRNNWRPHGESVRDQPHLGXIXEVKXIHET 253
+AD+ENL+++ K V K A + L+N P +S++ L E K +
Sbjct: 453 VADVENLLNSYKQLVLKYVALSQGMGINLEN-----PPVQSMQTVSDLVESEEPKNVKNA 507
Query: 252 VTSLLGQLRNAERVREDLMRKRID 181
V G + ++ ++ D + +D
Sbjct: 508 VNFSEGSSKTSDDIKNDTLYSEVD 531
>07_03_1652 -
28409097-28409165,28409788-28409911,28410317-28410557,
28410641-28411375,28411464-28411667,28411741-28412422,
28412517-28412773,28412849-28413543,28414003-28414250
Length = 1084
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 666 SAPLEYWEYFCRDNVQICEAARQKSADLRGSLNAILVN 553
S P + E+FCR+ +I +A Q+ +D + A+ VN
Sbjct: 137 SVPPDVREFFCRELDRIKDAGDQRKSDSGRRVEAVRVN 174
>07_01_0773 +
5963165-5963306,5963440-5963489,5963580-5963645,
5964162-5964188,5965320-5965375,5966613-5966681,
5966901-5966995,5967141-5967251,5970545-5970879,
5971218-5971253,5971254-5971421
Length = 384
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +2
Query: 305 LTLSPC--GLQLFLLSSLVWANFMAASIFLTESFRLSIKFSISAILCRVFLSISSSLVXN 478
+TL C L + +L+ W N + S +S+ F I C V L SSSL N
Sbjct: 91 ITLKKCPNSLSVNILTIYYWLNAWMVLFLIEYSNLMSLTFPIFFTFCSVRLDESSSLSNN 150
>03_03_0039 -
13986844-13986907,13987219-13987273,13987492-13987606,
13987652-13987774,13987962-13988015,13988352-13988411,
13988522-13988584,13988790-13988863,13989177-13989261,
13989376-13989456,13989764-13989856,13990275-13990339,
13990407-13990482,13990570-13990635,13991094-13991153,
13991233-13991322,13991755-13991817,13992502-13992625,
13993031-13993271,13993355-13993624,13993715-13994089,
13994178-13994381,13994455-13995136,13995231-13995279,
13995362-13995488,13995564-13996258,13996718-13996965
Length = 1433
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -3
Query: 666 SAPLEYWEYFCRDNVQICEAARQKSADLRGSLNAILVNGGRKLRNQADKTDMALAETVA 490
S P + E+FCR+ +I +A Q+ +D + A VN L AD+ + A VA
Sbjct: 137 SVPPDVREFFCRELDRIKDAGDQRKSDSGRRVEAARVN-YYDLTGDADEEEQMEAAIVA 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,258,074
Number of Sequences: 37544
Number of extensions: 293602
Number of successful extensions: 894
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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