Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b18
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    31   0.12 
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    31   0.16 
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    29   0.50 
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    27   2.7  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   3.5  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    26   4.7  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   4.7  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    26   4.7  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   6.2  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    25   8.2  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.2  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   8.2  

>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 22/85 (25%), Positives = 44/85 (51%)
 Frame = -2

Query: 679 LAAAGRNYESSLAQLCAALDQPKRAQQTLIQVITPEEIAARLSEQQSREEEPSTSEKSNA 500
           L+   +  E S+ Q+ ++++  K   +  +Q+   E++ A    Q+ R E+ S++ + N 
Sbjct: 212 LSVHNQQLEESIKQVSSSIELEKINAEQRLQISELEKLKAA---QEERIEKLSSNNR-NV 267

Query: 499 NDLYERAGHLQRFLEKFREWRVKIA 425
             L E    L+  L +F E+R K+A
Sbjct: 268 EILKEEKNDLESKLYRFEEYRDKVA 292


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -2

Query: 577 PEEIAARLSEQQSREEEPSTSEKSNANDLYERAGHLQRFLEKFRE---WRVKIADPPTPE 407
           P+ +     E ++ EEE + +   N N + +  G +  FLE+  +     +++ DP TPE
Sbjct: 416 PKIVIVEQVEDENEEEEEAIAAAENNNGVIQVQGSVVSFLERLDDEFTRSLQMIDPHTPE 475

Query: 406 AMAALMD 386
            +  L D
Sbjct: 476 YIDRLKD 482


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = -2

Query: 544 QSREEEPSTSEKSNANDLYERAGHLQRFLEKFREWRVKIADPPTPEAMAALMDLGFSHDD 365
           +S+++E   +  S+A D  + A  L+R + + RE RV+ A  PTP  + +  +  F+H  
Sbjct: 132 RSKKQEERENHSSDARDAIKSA--LRRRMRR-REGRVQKALRPTPNLICSKCNTTFNHST 188

Query: 364 A 362
           A
Sbjct: 189 A 189


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 477 DICNGFWRSFENGGSRSPILLLRKRWPR*W 388
           ++CNG +   E+GGS +P + +   W   W
Sbjct: 29  ELCNGIYSKSESGGSLNPAIYV--NWTEPW 56


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 255 PSGRPSTNSKTLDPLSPTSQEAAA 326
           P+ +PST+  T DP + T+Q +A+
Sbjct: 249 PTNKPSTDINTTDPATQTTQVSAS 272


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 127 HGSPLLSQISRTYHSEKYCSAVN 59
           + +P+++ ++ TYH + YCS  N
Sbjct: 418 YATPIVNDLADTYHVQVYCSLNN 440


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 644 GSTLRGSGPAEESSTDPDS-SDYSRRNSGPTQRTT 543
           GST+  +G +  +ST P + +   R+N+  T +TT
Sbjct: 232 GSTITSTGASTVTSTQPSTVTSTQRKNTATTTKTT 266


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 265 GRLLTQRHLTPYPRPAKKQRRPHYTPCSSTLYL 363
           GR    R L PYP PA     P+    S+  YL
Sbjct: 162 GRCNGNRVLPPYPEPALLPEAPNTREASNNTYL 194


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -1

Query: 713 DPDIXHRSRRKTGGGRP*LRVVFGSTLRGSGPAEESSTDPDSSDYSR-RNSGPTQRTTIA 537
           D D  HRSRR++   RP        + R S  AE +S + +  +  R       Q    A
Sbjct: 191 DDDRDHRSRRRSRSRRPGRSRSRRRSRRPSPSAEHNSAEENDPELQRVIEESKRQAEEDA 250

Query: 536 RRRTL-DL*EIERERPIRASR 477
           +RR + +  E E ++ I+ S+
Sbjct: 251 KRRNMANDSEAELQKAIQLSK 271


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -2

Query: 574 EEIAARLSEQQS---REEEPSTSEKSNANDLYERAGHLQRFLEKFRE 443
           E ++ + S Q+S   RE+E    E  +  +LYE++ H  +  E+ RE
Sbjct: 147 ETLSTQYSIQRSQWVREDEKKKKEIQDLKELYEKSEHGAKNWERERE 193


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -2

Query: 715 KILISXIEAGARLAAAGRNYESSLAQLCAALDQPKRAQQTLIQVITP 575
           KIL        R AA   N  SS+ +  A + QPK A  +     TP
Sbjct: 117 KILAEIERDKKRRAAERENKNSSVKETAAPIKQPKNANSSSTCTRTP 163


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 409 EAMAALMDLGFSHDDADRALRNTG 338
           E    L DLGFS D +  AL N+G
Sbjct: 186 EMYEKLRDLGFSDDQSRLALENSG 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,752
Number of Sequences: 5004
Number of extensions: 52262
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)