Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14b18
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240... 34 0.098
04_04_1425 + 33463039-33463330,33464370-33464460,33465299-334656... 33 0.17
07_03_0387 - 17536026-17536636,17536772-17537150 32 0.52
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 31 0.69
09_03_0166 + 12956794-12956832,12956936-12956977,12957084-129571... 31 0.91
07_01_0817 + 6533316-6533849,6533996-6534064,6534528-6534767,653... 31 1.2
05_01_0363 - 2846133-2846441,2846820-2846885,2847184-2847276,284... 30 1.6
03_02_0456 - 8634618-8635062,8635155-8635322,8635414-8635698,863... 30 1.6
07_01_0008 - 56178-57095 30 2.1
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 30 2.1
11_06_0746 + 26863538-26863716,26863881-26864168,26864268-26864580 29 3.7
07_03_0876 - 22215688-22215789,22216051-22216206,22217227-222172... 29 3.7
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 29 3.7
04_04_1654 - 35075409-35075926,35076396-35078694 29 3.7
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 29 3.7
01_02_0027 - 10331614-10331737,10332435-10332526,10332977-103330... 29 3.7
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 29 4.9
05_01_0120 - 828834-831143 29 4.9
04_04_1406 + 33340509-33340681,33342737-33342839,33342931-333431... 28 6.4
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 28 8.5
>01_06_0946 + 33220910-33222221,33223373-33223734,33223863-33224073,
33224174-33224411,33224492-33224642,33224733-33224997,
33231775-33231820,33232167-33232815,33232883-33233384,
33235023-33235360,33235466-33235676,33235769-33235992,
33236042-33236115,33236147-33236234,33236316-33236612
Length = 1655
Score = 34.3 bits (75), Expect = 0.098
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 442 WRVKIADPPTPEAMAALMDLGFSHDDADRA-LRNTGCNVAAAASWLVGDRGSSVFELVD 269
WRV PEA A + G + D +A LRN CN AAA+ GD VF VD
Sbjct: 1160 WRVNRMK--LPEATKATVHAGMTLDQCRQACLRNCSCNAYAAANVSGGDSRGCVFWTVD 1216
>04_04_1425 +
33463039-33463330,33464370-33464460,33465299-33465656,
33465771-33465944,33466403-33466607,33466717-33466784,
33467279-33467360,33467513-33467549,33467822-33467913,
33469219-33469294,33469402-33469585,33469859-33469867
Length = 555
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = -2
Query: 706 ISXIEAGARLAAAGRNYESSLAQLCAALDQPKRAQQTLIQVITPEEIAARLSEQQSREEE 527
+S EA A +AAAG ESS L + + +R +++ +PEE AA E++ +EE
Sbjct: 40 LSLAEASASVAAAGAGAESSPGWLSSIVSGARRVISSVL-FSSPEE-AASGEEEEDDDEE 97
Query: 526 PSTSEKSNA 500
T + A
Sbjct: 98 DETEDNHGA 106
>07_03_0387 - 17536026-17536636,17536772-17537150
Length = 329
Score = 31.9 bits (69), Expect = 0.52
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 210 PRWI*GCFSKDCSIGPSGRPSTNSKTLDPLSPTSQEAAAATLHPVFLNALSASSCEKP 383
P W G S SIG +G ++ S TL P++P +AT + A + + P
Sbjct: 108 PLWATGSASASLSIGATGTVASGSPTLRPVTPAEGAGLSATSGTTMIFATAPAPVSTP 165
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 31.5 bits (68), Expect = 0.69
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -2
Query: 433 KIADPPTPEA-MAALMDLGFSHDDADRALRNTGCN-VAAAASWL 308
++ PP E+ +A ++++GFS A+ ALR+ N V A WL
Sbjct: 1199 RLTSPPLDESSIATIVEMGFSRARAEEALRSVRTNSVEMATDWL 1242
>09_03_0166 +
12956794-12956832,12956936-12956977,12957084-12957149,
12957237-12957350,12957435-12957515,12957613-12957690,
12958702-12958784,12959645-12959726,12959801-12959901,
12960016-12960055,12960162-12960221,12960302-12960348,
12960437-12960575,12960716-12960931,12961010-12961344,
12961525-12961596,12962449-12962589,12962680-12962716,
12962837-12963256
Length = 730
Score = 31.1 bits (67), Expect = 0.91
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 538 REEEPSTSEKSNANDLYERAGHLQRFLE 455
R + P++ + S NDL ERA HLQ LE
Sbjct: 601 RTDAPNSDDASKKNDLAERAHHLQSTLE 628
>07_01_0817 +
6533316-6533849,6533996-6534064,6534528-6534767,
6537747-6537965,6538041-6538133,6538231-6538332,
6538415-6538858
Length = 566
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/54 (31%), Positives = 35/54 (64%)
Frame = -2
Query: 592 IQVITPEEIAARLSEQQSREEEPSTSEKSNANDLYERAGHLQRFLEKFREWRVK 431
+Q +T E + + E QS+ EE ++ +++ + E++GH++RFL++ E R+K
Sbjct: 498 VQKLTVENLQLK-GELQSQREELNSQKRT----VEEQSGHMERFLDQELEERMK 546
>05_01_0363 -
2846133-2846441,2846820-2846885,2847184-2847276,
2847487-2847600,2847762-2847849,2848116-2848199,
2848312-2848411,2848886-2848949,2849339-2849419,
2849944-2850000,2850188-2850387,2850668-2850971,
2851518-2851707,2851922-2852032,2852111-2852192,
2852443-2853046
Length = 848
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 424 DPPTPEAMAALMDLGFSHDDADRALRNTGCNVAAAASWLVGDRGS 290
D +A L+D+GF D+ RA+ G A +++G G+
Sbjct: 9 DVSADRVIAELLDMGFEFDEISRAIGAVGTRCADVLEFMLGGSGN 53
>03_02_0456 -
8634618-8635062,8635155-8635322,8635414-8635698,
8635793-8636178
Length = 427
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/91 (31%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Frame = -2
Query: 490 YERAGHLQRFLEKFREWRVKIADPPTPEAMAALMDLGFSH-----DDADRALRNTGCNVA 326
Y R HL LE R+ DP T A L L F + DD L + N
Sbjct: 221 YNRKDHLNVLLEGEGTGRLLRYDPETKAAHVVLSGLVFPNGVQISDDQQFLLFSETTNCR 280
Query: 325 AAASWLVGDRGS--SVFELVDGLPDGPILQS 239
WL G R VF + G PD L S
Sbjct: 281 IMRYWLEGPRAGQVEVFADLPGFPDNVRLSS 311
>07_01_0008 - 56178-57095
Length = 305
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/67 (34%), Positives = 30/67 (44%)
Frame = +1
Query: 211 LVGSEAALVKTAV*DHRAGRLLTQRHLTPYPRPAKKQRRPHYTPCSSTLYLRHRVKNPGP 390
+V AA V+ + H G + HL P PA+ HY S+TL LR
Sbjct: 100 IVFDAAARVRIDLAGHTTGTAAS--HLAPSSAPARLHSWIHYNATSATLQLR----LSAT 153
Query: 391 STRPSLP 411
S RP+LP
Sbjct: 154 SRRPALP 160
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/88 (18%), Positives = 42/88 (47%)
Frame = -2
Query: 682 RLAAAGRNYESSLAQLCAALDQPKRAQQTLIQVITPEEIAARLSEQQSREEEPSTSEKSN 503
+LAA +Y+ ++ L +L + +++TL ++ EE + E++ ++E + +
Sbjct: 133 KLAACAADYDPAIRALQQSLAE-HYSEETLAKLGEAEEARKEIEERERLDQEAADHHRDR 191
Query: 502 ANDLYERAGHLQRFLEKFREWRVKIADP 419
ND +++ + + + + DP
Sbjct: 192 GNDFFKQKRYQEAAMHYTEAMKKNPKDP 219
>11_06_0746 + 26863538-26863716,26863881-26864168,26864268-26864580
Length = 259
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 154 SATLWLNSPHGSPLLSQISRTYHSEKYCSAVNQFSNEMEQINPST 20
+AT + G PLL + YH E C + SN++E I P +
Sbjct: 170 TATKNAQATDGDPLLFDV--VYHGEHTCDLQSTHSNDVEPIRPQS 212
>07_03_0876 -
22215688-22215789,22216051-22216206,22217227-22217247,
22217311-22217580,22217793-22219178,22220562-22220621
Length = 664
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 496 DLYERAGHLQRFLEKFREWR 437
DL A HL RF+ FR WR
Sbjct: 406 DLSREAAHLSRFIYNFRRWR 425
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +2
Query: 251 RTIGQAVY*LKDT*PPIP-DQPRSSG---GHITPRVPQRSICVI 370
RT+G AVY P+P DQP S G GHI P Q + V+
Sbjct: 169 RTVGPAVYPYGQFGQPVPGDQPYSPGYVPGHILPLSNQNAANVV 212
>04_04_1654 - 35075409-35075926,35076396-35078694
Length = 938
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -2
Query: 160 SGSATLWLNSPHGSPLLS 107
SG TLWLN+ HG P LS
Sbjct: 209 SGLQTLWLNNQHGVPKLS 226
>01_06_0847 +
32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 595 LIQVITPEEIAARLSEQQSREEEPSTSEKSNANDLYERAGHLQRFL 458
LI++ EE RL + E++ S SEK NA + + LQR L
Sbjct: 152 LIRITELEEEIRRLKQVLVEEKKKSNSEKKNAEEEKGKVLELQRLL 197
>01_02_0027 -
10331614-10331737,10332435-10332526,10332977-10333055,
10333110-10333408,10335310-10335588
Length = 290
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 409 EAMAALMDLGFSHDDADRALRNTGCN 332
E + A+ D+GF D+ DR++RN N
Sbjct: 70 EMVGAIWDVGFERDNPDRSMRNEHVN 95
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 265 GRLLTQRHLT-PYPRPAKKQRRPHYTPCSSTLYLR 366
G+LLT+ + P P +K+Q+ P PC S + L+
Sbjct: 1073 GKLLTETKTSDPAPVGSKEQKEPSVAPCPSDIVLK 1107
>05_01_0120 - 828834-831143
Length = 769
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/50 (44%), Positives = 26/50 (52%)
Frame = +3
Query: 234 SKDCSIGPSGRPSTNSKTLDPLSPTSQEAAAATLHPVFLNALSASSCEKP 383
SK S PS PST+S T LSP S + TL P + L SS E+P
Sbjct: 517 SKYSSDSPSLSPSTSSPTSLGLSPASSN-FSHTLVPSSRSPLHQSSNEEP 565
>04_04_1406 +
33340509-33340681,33342737-33342839,33342931-33343156,
33343270-33343327,33343639-33343729
Length = 216
Score = 28.3 bits (60), Expect = 6.4
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Frame = -2
Query: 706 ISXIEAGARLAAAGRNYESSLAQLCAALDQPKRAQQTLIQVITPE---EIAARLSEQQSR 536
I I A A AA+ +++A + Q + V+T + + + Q
Sbjct: 96 IMLIAAAAAAAASATKSNAAIAVKPPVMPAANATQAAVSPVLTRSLSLQSTSVATGQPQV 155
Query: 535 EEEPSTSEKSNANDLYERAGHLQRFLEKFREWRVKIADPPT 413
+PS+ K A+ R LQRFLEK R+ V A PT
Sbjct: 156 AADPSSICKLQADLPIARRHSLQRFLEKRRDRLVSKAPYPT 196
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 27.9 bits (59), Expect = 8.5
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Frame = -2
Query: 697 IEAGARLAAA--GRNYESSLAQLCAALDQPKRAQQTLIQVITPEEIAAR-----LSEQQS 539
I GAR + A N+ S Q C L K A Q ++ + ++ A L
Sbjct: 1322 ISLGARQSRAYGSHNFGSDTWQYCLRLRDKKLAAQLALKYLHNWDLDAAANVLTLCICHL 1381
Query: 538 REEEPSTSEKSNANDLYERAGHLQRFLEKFREWR-VKIADPPTPEAMA 398
E +P SE +R GH+ + + W+ V++ PE +A
Sbjct: 1382 PENDPMWSEVLRMKQSLQRYGHIMTADDHYTRWQEVEVDCEDDPEGLA 1429
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,204,700
Number of Sequences: 37544
Number of extensions: 416760
Number of successful extensions: 1725
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1723
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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