Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14b18
(716 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical pr... 32 0.47
Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical pr... 32 0.47
DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor ... 32 0.47
U41015-4|AAA82313.1| 317|Caenorhabditis elegans Hypothetical pr... 31 0.62
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 30 1.4
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme... 29 2.5
AF067936-7|AAC19215.1| 316|Caenorhabditis elegans Hypothetical ... 29 3.3
Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical pr... 29 4.4
U50066-2|AAA93438.2| 202|Caenorhabditis elegans Hypothetical pr... 29 4.4
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 4.4
Z81143-9|CAB03520.1| 440|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z75713-10|CAB00057.1| 440|Caenorhabditis elegans Hypothetical p... 28 5.8
AC084197-3|AAN63427.1| 173|Caenorhabditis elegans Histone h1 li... 28 5.8
U13646-4|AAC24420.1| 211|Caenorhabditis elegans Hypothetical pr... 28 7.7
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 28 7.7
>Z69791-6|CAL36514.1| 241|Caenorhabditis elegans Hypothetical
protein F39D8.2b protein.
Length = 241
Score = 31.9 bits (69), Expect = 0.47
Identities = 34/99 (34%), Positives = 41/99 (41%)
Frame = -2
Query: 352 LRNTGCNVAAAASWLVGDRGSSVFELVDGLPDGPILQSLLKQPQIQRGLLNTRMLIAFIA 173
LR T C+ A LVG+ G S EL D P P+L+ Q Q N M A
Sbjct: 117 LRRTVCHEA-----LVGNNGDSDDELSDN-PLMPVLEMSEAAFQAQ----NKAMESALAT 166
Query: 172 MVGQSGSATLWLNSPHGSPLLSQISRTYHSEKYCSAVNQ 56
+ SGS +L L H S +QI R K C Q
Sbjct: 167 LQSVSGSLSLPLQFTHQSITAAQIERNLEFLKQCGFPTQ 205
>Z69791-5|CAL36513.1| 281|Caenorhabditis elegans Hypothetical
protein F39D8.2a protein.
Length = 281
Score = 31.9 bits (69), Expect = 0.47
Identities = 34/99 (34%), Positives = 41/99 (41%)
Frame = -2
Query: 352 LRNTGCNVAAAASWLVGDRGSSVFELVDGLPDGPILQSLLKQPQIQRGLLNTRMLIAFIA 173
LR T C+ A LVG+ G S EL D P P+L+ Q Q N M A
Sbjct: 157 LRRTVCHEA-----LVGNNGDSDDELSDN-PLMPVLEMSEAAFQAQ----NKAMESALAT 206
Query: 172 MVGQSGSATLWLNSPHGSPLLSQISRTYHSEKYCSAVNQ 56
+ SGS +L L H S +QI R K C Q
Sbjct: 207 LQSVSGSLSLPLQFTHQSITAAQIERNLEFLKQCGFPTQ 245
>DQ118141-1|AAZ23152.1| 241|Caenorhabditis elegans hox cofactor
PSA-3 splice variantbeta protein.
Length = 241
Score = 31.9 bits (69), Expect = 0.47
Identities = 34/99 (34%), Positives = 41/99 (41%)
Frame = -2
Query: 352 LRNTGCNVAAAASWLVGDRGSSVFELVDGLPDGPILQSLLKQPQIQRGLLNTRMLIAFIA 173
LR T C+ A LVG+ G S EL D P P+L+ Q Q N M A
Sbjct: 117 LRRTVCHEA-----LVGNNGDSDDELSDN-PLMPVLEMSEAAFQAQ----NKAMESALAT 166
Query: 172 MVGQSGSATLWLNSPHGSPLLSQISRTYHSEKYCSAVNQ 56
+ SGS +L L H S +QI R K C Q
Sbjct: 167 LQSVSGSLSLPLQFTHQSITAAQIERNLEFLKQCGFPTQ 205
>U41015-4|AAA82313.1| 317|Caenorhabditis elegans Hypothetical
protein F20B6.5 protein.
Length = 317
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 617 AEESSTDPDSSDYSRRNSGPTQRTTIARRRTLD-L*EIERERPIRASRTFATVFGE 453
AEE +PD S S RN GP T +R + D ++ E P R+S T E
Sbjct: 172 AEELGREPDRSSRSARNEGPRAETGREKRSSEDRKRQVPPEEPRRSSHQSKTAKSE 227
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 632 RGSGPAEESSTDPDSSDYSRRNSGPTQRTTIARRRTLDL*EIERERPIRASRTFA 468
R +GP SS+ P SS S+++SGP+ I++ D + + E P + + A
Sbjct: 622 RKNGPPS-SSSKPSSSKTSKKSSGPSSSKAISKEYISDSDDSDDEEPKKKEKKAA 675
>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
protein 1 protein.
Length = 1425
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 421 PPTPEAMAALMDLGFSH 371
PPTPE M+A + GFSH
Sbjct: 983 PPTPEPMSATLTAGFSH 999
>AF067936-7|AAC19215.1| 316|Caenorhabditis elegans Hypothetical
protein C24G6.8 protein.
Length = 316
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 409 EAMAALMDLGFSHDDADRALRNT-GCNVAAAASWLVGDRGSSVFE 278
E +A L+DLGF A AL+ T V A +W+V S F+
Sbjct: 132 EYLAHLLDLGFDEYTAVLALKRTNSAGVEQAVAWIVERSNESDFD 176
>Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical
protein C09G5.2 protein.
Length = 476
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 478 GHLQRFLEKFREWRVKIADPPTPEAMAALMDLGFSHD 368
G + F+++FR +AD T E + LMD FSH+
Sbjct: 138 GSMPIFIDQFRMEFQNVADQLTAEHIVLLMDSCFSHE 174
>U50066-2|AAA93438.2| 202|Caenorhabditis elegans Hypothetical
protein T14A8.2 protein.
Length = 202
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = -1
Query: 629 GSGPAEESSTDPDSSDYSRRNSGPTQRTTIARRRTLDL*EIERERPIRASRTFATVFGEV 450
G P + SST P SSD + T+ TT E+E +PI A+ + V +
Sbjct: 102 GEAPVDSSSTAPMSSDEPKIEE-TTEETTEETPVLSKEPEVEESKPIEAATVVSAVEDQP 160
Query: 449 SRME 438
S E
Sbjct: 161 STSE 164
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 274 LTQRHLTPYPRPAKKQRRPHYTPCSSTLYLRHRVKNPGPSTRPSLPE*EDRRS*PSILET 453
+ ++ TP P P + P P + R+ + PGP+ P+L S P I+E
Sbjct: 1707 IIEKSATPAPAPVTQ---PAVQPAPGPVEHRYEIPAPGPAPGPALEPAPAPTSAPQIVEP 1763
Query: 454 SP 459
P
Sbjct: 1764 LP 1765
>Z81143-9|CAB03520.1| 440|Caenorhabditis elegans Hypothetical
protein ZK265.8 protein.
Length = 440
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 611 ESSTDPDSSDYSRRNSGPTQRTTIARRRT 525
+++ P SDY N P Q+TT A RR+
Sbjct: 311 KTTPKPSGSDYDYENEKPQQKTTNAPRRS 339
>Z75713-10|CAB00057.1| 440|Caenorhabditis elegans Hypothetical
protein ZK265.8 protein.
Length = 440
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 611 ESSTDPDSSDYSRRNSGPTQRTTIARRRT 525
+++ P SDY N P Q+TT A RR+
Sbjct: 311 KTTPKPSGSDYDYENEKPQQKTTNAPRRS 339
>AC084197-3|AAN63427.1| 173|Caenorhabditis elegans Histone h1 like
protein 2, isoformb protein.
Length = 173
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 267 PSTNSKTLDPLSPTSQ-----EAAAATLHPVFLNALSASSCEKP 383
P+ + T P +P S+ +A A HP F+N ++A++ +KP
Sbjct: 60 PAVKTPTKAPKAPKSKTTKEPKAKVAAAHPPFINMVTAAATKKP 103
>U13646-4|AAC24420.1| 211|Caenorhabditis elegans Hypothetical
protein ZK783.3 protein.
Length = 211
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 622 DQPKRAQQTLIQVITPEEIAAR-LSEQQSREEEPSTSEKSNAN 497
D P + T++ I EE+ + + E++ E++ S SEK+ N
Sbjct: 100 DAPAQTPDTIMSEIKKEELKEKGMKEEKKEEKKDSRSEKNTEN 142
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -2
Query: 427 ADPPTPEAMAALMDLGFSHDDADRALRNTGCNVAAAASWLV 305
A P + + LMDLGFS D AL +T N AA++L+
Sbjct: 1432 AADPHEDTIVMLMDLGFSRDIVLYALESTR-NADEAANYLL 1471
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,070,240
Number of Sequences: 27780
Number of extensions: 304020
Number of successful extensions: 1210
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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