Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14b15
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 374 e-104
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 372 e-104
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 160 2e-40
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 91 2e-19
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.2
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 27 2.9
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 27 2.9
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 26 5.0
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 6.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 374 bits (919), Expect = e-104
Identities = 167/207 (80%), Positives = 188/207 (90%)
Frame = -2
Query: 749 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 570
Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EIT
Sbjct: 237 QVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEIT 296
Query: 569 NACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFK 390
N CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK
Sbjct: 297 NQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFK 356
Query: 389 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEG 210
+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAWSRL+HKFDLMY+KRAFVHWYVGEG
Sbjct: 357 IGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEG 416
Query: 209 MEEGEFSEAREDLAALEKDYEEVGMDS 129
MEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 417 MEEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 372 bits (915), Expect = e-104
Identities = 167/207 (80%), Positives = 187/207 (90%)
Frame = -2
Query: 749 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 570
Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EIT
Sbjct: 233 QVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEIT 292
Query: 569 NACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFK 390
N CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK
Sbjct: 293 NQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFK 352
Query: 389 VGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEG 210
+GI +PP + G ++AKV RAVCMLSNTT+IAEAWSRL+HKFDLMY+KRAFVHWYVGEG
Sbjct: 353 IGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEG 412
Query: 209 MEEGEFSEAREDLAALEKDYEEVGMDS 129
MEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 413 MEEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 160 bits (389), Expect = 2e-40
Identities = 78/208 (37%), Positives = 123/208 (59%), Gaps = 3/208 (1%)
Frame = -2
Query: 746 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITN 567
+++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ + + + +SV E+T
Sbjct: 232 VMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQ 291
Query: 566 ACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKV 387
F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P
Sbjct: 292 QMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLK 351
Query: 386 GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGM 207
+ PP DL + + + N+T+I E + RL +F M+ ++AF+HWY GEGM
Sbjct: 352 AVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGM 403
Query: 206 EEGEFSEAR---EDLAALEKDYEEVGMD 132
+E EF+EA DL + + Y+E G+D
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 91.1 bits (216), Expect = 2e-19
Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 7/207 (3%)
Frame = -2
Query: 746 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---AEKAYHEQLSVAE 576
++S+ T +LR+ G +N DL +L+P PR HF L +Y P + E + +V +
Sbjct: 235 VMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLD 294
Query: 575 ITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPT 399
+ P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P
Sbjct: 295 VMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPA 354
Query: 398 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYV 219
+V ++ + P + ++ + ML+N T+IA + R ++D + + AF+ Y
Sbjct: 355 SIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYK 409
Query: 218 GEGMEE---GEFSEAREDLAALEKDYE 147
E + E EF +R+ +A L +YE
Sbjct: 410 KEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 575 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 450
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = -2
Query: 515 KYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 336
++ + Y + KDVN +G TI +W PTG ++ Y V D
Sbjct: 142 RHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-GN 199
Query: 335 VQR 327
VQR
Sbjct: 200 VQR 202
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 27.1 bits (57), Expect = 2.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -3
Query: 55 LRSRVCFSLWLFFHCY 8
+R C+ +W F+HCY
Sbjct: 429 IRDASCYFVWSFYHCY 444
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 91 FTIYF-LGCLWIL-LRSRVCFSLWLFFHCYV 5
F IYF L WI RSR CF L L F +V
Sbjct: 557 FNIYFPLMSPWIQRFRSRCCFRLGLLFSIFV 587
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 282 PRLCYGSSIGQHAHGALHLRQISTRYHSWWLIVYPHLESCRAPVYKLNGAFRFD-GANGG 458
PR Y ++G+ A GA+ Q+ +L+VYP + +L G + G N
Sbjct: 710 PRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNAT 769
Query: 459 IYIL 470
+ I+
Sbjct: 770 VAIM 773
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,798
Number of Sequences: 5004
Number of extensions: 67670
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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