Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b15
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.4  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       21   9.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 378 LSATNCGTGWRFGEGAARRVHAVQYY 301
           LS  N GTGW F EG  ++ +  Q+Y
Sbjct: 172 LSVFN-GTGWTFHEG-RKQFYFHQFY 195


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 329 AAPSPNLHPVPQLVADSLSPP 391
           AAP P   P P+  AD+ + P
Sbjct: 21  AAPEPEPAPEPEAEADAEADP 41


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 203 PPSPLPRTNARMHA 244
           PP P P   ARM A
Sbjct: 385 PPGPTPAQKARMRA 398


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 90  KLIFLAAFSLALTGIHSHL 146
           K + LAAFSL LT I  +L
Sbjct: 312 KSLALAAFSLMLTSILRYL 330


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 456 RHWHHQNETHHSVCRLVPD 400
           RH H QN  HH     V D
Sbjct: 140 RHHHLQNHHHHLQSTAVQD 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,594
Number of Sequences: 438
Number of extensions: 4887
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)