Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b14
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1021 - 22315487-22315493,22317051-22317154,22317227-223173...    29   3.7  

>10_08_1021 -
           22315487-22315493,22317051-22317154,22317227-22317328,
           22317623-22317745,22318038-22318094,22318498-22318758,
           22318948-22319377,22320168-22320286,22320515-22320595
          Length = 427

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 161 LCLNNWLMVLITYCANRRNKFSIWPSYSVGKF 256
           L  NNWL++LI   +  R KFS   S S  +F
Sbjct: 307 LLTNNWLLILIEESSEARQKFSNAKSISSSQF 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,932,861
Number of Sequences: 37544
Number of extensions: 311045
Number of successful extensions: 489
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)