Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b14
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   8.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 413 FRYTDLVRQSLFKSP 457
           F Y  L+RQS+ +SP
Sbjct: 507 FTYASLIRQSIIESP 521


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -2

Query: 167 NIISKKYRHAYKLEVLV*SGLASPRVFMAFSSPTTASSITDEK 39
           N++S KYR+A+K  +   + +   R ++   S    +S +D++
Sbjct: 329 NLMSIKYRNAFKQTICCKTRIIGRRSWVTRESQICNNSSSDKE 371


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 167 NIISKKYRHAYKL 129
           NI+S K+R A+KL
Sbjct: 349 NIMSNKFREAFKL 361


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 701 CAMLCEILEFICMSRISR 754
           C +   +LEF+C++ + R
Sbjct: 372 CFIYASLLEFVCVNYVGR 389


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 701 CAMLCEILEFICMSRISR 754
           C +   +LEF+C++ + R
Sbjct: 341 CFIYASLLEFVCVNYVGR 358


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 701 CAMLCEILEFICMSRISR 754
           C +   +LEF+C++ + R
Sbjct: 392 CFIYASLLEFVCVNYVGR 409


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 701 CAMLCEILEFICMSRISR 754
           C +   +LEF+C++ + R
Sbjct: 341 CFIYASLLEFVCVNYVGR 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,208
Number of Sequences: 438
Number of extensions: 4017
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)