Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b13
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    30   0.44 
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     28   1.8  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    28   1.8  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   1.8  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    28   1.8  
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    27   3.1  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   3.1  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    27   4.1  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    26   5.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   5.4  
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    26   7.1  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   7.1  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    25   9.4  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    25   9.4  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   9.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   9.4  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 23/77 (29%), Positives = 32/77 (41%)
 Frame = -3

Query: 567 KTNNTFHELKNSRNPVILYCHGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNL 388
           K + TF+ LK    P++       +    V  L +L +E   E LR  DAL      N  
Sbjct: 41  KFSFTFNGLKEEDGPILFDFSKNLITEETVELLVKLAKEANVEGLR--DALFAGEHINFT 98

Query: 387 KDEIAKHPLSKLVSWLP 337
           +D    HP  + VS  P
Sbjct: 99  EDRAVFHPALRNVSEKP 115


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 369 HPLSKLVSWLP-YFKNTFVKPFTDSPDYSFTTDEYLAVVPDLPI 241
           H L+   S L    +NTFVK   ++ D S T D++ ++V D  I
Sbjct: 578 HELTPFASQLAKQLRNTFVKLMQETMDESTTVDDFDSLVDDKSI 621


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 25/81 (30%), Positives = 32/81 (39%)
 Frame = +3

Query: 192 PPTHRERLCPLSNVASKSEGPEPRRDTHQS*TNSRENR*TVLRTYS*SRAARKPVSIEDV 371
           P  HR    P S+  S+S  P    D+HQS +  R          S S  +R P S    
Sbjct: 113 PRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRD---RDRSSRSSRSRHPSSRS-- 167

Query: 372 WRFRPSNY*REPPRPAHQEAS 434
            R R  +Y R PP  +    S
Sbjct: 168 -RHRYDDYSRSPPYSSRHSRS 187


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 735 CINFPRNLNYDSPSSCSVTCGRNLNIEFRSIVDN 634
           CI   RNLNY+   SC V   +   +E  S+ D+
Sbjct: 631 CIKKRRNLNYNENLSCKVDLDKKKMLETLSLSDS 664


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 623 LMRKLSTIERNSMLRFLPHVTLQLDGLS*FKFLG 724
           LM   + ++++ M   +P +TL +DGLS F  LG
Sbjct: 98  LMLTTNLLKKDLMSSKVPEITLAIDGLSHFSTLG 131


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = +1

Query: 400 GSLQDQRIRKPQFL*ASLLTQLFQVGYEICRDSSSMTIQYDRIPAILKLMKGIIGFEISD 579
           G+  DQ  R+     ++++++L   GY +   +   +IQ D+   +    KGI+   +S 
Sbjct: 86  GAGGDQAARQEDKPRSAIISELLSRGYHLSDVTLEKSIQLDQSYGVSSKFKGILESALSG 145

Query: 580 VLNFRVRQYMPD 615
           V +   R ++ +
Sbjct: 146 VRSVNERYHVTE 157


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 726  FPRNLNYDSPSSCSVTCGRNLNIEFRSIVDNFLIRLGIWHILPN 595
            F  N++    S CS+    NL+ + R ++ N+  R+G  HIL N
Sbjct: 1775 FSENIHTLYFSCCSMIAKENLDDQLRELLKNYFNRVG--HILLN 1816


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 378 IAKHPLSKLVSWLPYFKNTFVKPFTDSPDYSFTTDEYL 265
           IA  PLS    +L Y KN F+  F    + S +TD+ L
Sbjct: 645 IAMSPLSNNALFLAYDKNPFLTYFKRGLNVSLSTDDPL 682


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 501 TAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAKHPL 361
           T V+  F+  L+   +E+  EK+   D   +   F  LKDE    PL
Sbjct: 465 TKVSKTFLKKLDAFHEEKLREKINSSDKGDVSYEFELLKDETVFSPL 511


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 372  KHPLSKLVSWLPYFKNTFVKPFTDSPDYSF-TTDEYLAVV 256
            K  L  + SWL  F + F + F D   + F  TDEY +V+
Sbjct: 1042 KRELKMVYSWLQLFYD-FFRNFQDIAPFDFLNTDEYKSVM 1080


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 330 KNTFVKPFTDSPDYSFTTDEYLAVV 256
           K TF++ +TD   Y +  DEY  ++
Sbjct: 51  KKTFIESWTDYETYGWGKDEYYPII 75


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 591 EIKDVADLKTNNTFHELKNSRNPVILYCHGTAVAANFVSNLEELCQERGS 442
           E+    D +   T  EL N  NPV+   +      ++V  LE  CQ+R S
Sbjct: 242 ELFTTEDFEDKETL-ELVNRLNPVVWRTYLRKSLNSYVDKLEVYCQKRKS 290


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -3

Query: 435 LRLPDAL--VLEAPFNNLKDEIAKHPLSKLVSWLPYFKNTFVKPFTDSPDYSFTTDEYLA 262
           LR+P A   VL  PF  L+ +I    +  ++  L +     + P   S   + T  + + 
Sbjct: 322 LRVPSARDSVLLEPFQPLQLDIQAEDIHSVIDALEHMTAPEILPEWHSSKGNVTATKQMY 381

Query: 261 VVPDLPILMLHSK 223
           +    P+L+LH K
Sbjct: 382 IESLPPVLILHLK 394


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = -3

Query: 780 SDTIKTVQRKVVFSNCI-NFPRNLNYDSPSSCSVTCGRNLNIEFRSIVDNFLIRLGIWHI 604
           +D  K  +  V + N + NFP ++    PS+ S++    +++EF+ +  N +  +  +H 
Sbjct: 173 TDLSKLEKTCVQYMNSVQNFPTDIPV--PSNLSISNLDVVSVEFKRLKRNSIFLINSFHS 230

Query: 603 LPNSEIKDVAD 571
              + I+D+ D
Sbjct: 231 KVITSIQDLED 241


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 552 FHELKNSRNPVILYCHGTAVAANFVSNL 469
           FH   N + PV ++ HG   + N  S+L
Sbjct: 108 FHPPNNGKLPVFIFSHGLVGSRNVYSSL 135


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -1

Query: 722 RET*TTIARLVAAL---HAGETSTLSSVRSWTI 633
           R + TTI R  A++   H G+TSTLS  RS +I
Sbjct: 309 RSSRTTIRRTGASIRTIHRGKTSTLSGNRSHSI 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,987
Number of Sequences: 5004
Number of extensions: 66893
Number of successful extensions: 236
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)