Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b13
         (791 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001585-1|AAN71340.1|  411|Drosophila melanogaster RE26090p pro...    76   6e-14
AE013599-2824|AAM68437.1|  411|Drosophila melanogaster CG15111-P...    76   6e-14
AE013599-2823|AAF57599.2|  393|Drosophila melanogaster CG15111-P...    76   6e-14
BT024279-1|ABC86341.1| 1108|Drosophila melanogaster IP14124p pro...    33   0.45 
AE014296-2211|AAF49869.1| 1371|Drosophila melanogaster CG14120-P...    33   0.45 
AY061005-1|AAL28553.1|  527|Drosophila melanogaster HL02088p pro...    33   0.59 
AF536543-1|AAN77184.1|  960|Drosophila melanogaster SR-related C...    33   0.59 
AE014296-2867|AAX52741.1|  960|Drosophila melanogaster CG33522-P...    33   0.59 

>BT001585-1|AAN71340.1|  411|Drosophila melanogaster RE26090p
           protein.
          Length = 411

 Score = 75.8 bits (178), Expect = 6e-14
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
 Frame = -3

Query: 528 NPVILYCH--GTAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAKHPLSK 355
           NP++++ H  GT VA +       LC +  S + R P  ++LE+PF N++DEI  HP +K
Sbjct: 251 NPIVVWGHSLGTGVATH-------LCAKLASLRERAPRGVILESPFTNIRDEIRMHPFAK 303

Query: 354 LVSWLPYFKNTFVKPFTDSPDYSFTTDEYLAVVPDLPILMLHSKGDRVVPYELAVKLQNK 175
           L   LP+F  T  +P   +    F +D ++      PI+++H++ D VVP+ L  +L   
Sbjct: 304 LYKNLPWFNFTISQPMYTN-RLRFESDVHVLEFRQ-PIMIIHAEDDVVVPFNLGYRLYRI 361

Query: 174 LVQSRKSSSAPFTF 133
            +  R  +S P  F
Sbjct: 362 ALDGRSRTSGPVEF 375



 Score = 43.2 bits (97), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -3

Query: 765 TVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLNIEFRSI-VDNFLIRLGIWHILPNSE 589
           T QR ++F   I +P+ L+   P S  +   RN  I  +    D   +R+G+WH+LP++ 
Sbjct: 58  TFQRGILFLTFIKYPKGLDLTKPESVGLYATRNFYITVKDHDQDEDGVRVGVWHVLPSNA 117

Query: 588 IK 583
           ++
Sbjct: 118 VR 119


>AE013599-2824|AAM68437.1|  411|Drosophila melanogaster CG15111-PB,
           isoform B protein.
          Length = 411

 Score = 75.8 bits (178), Expect = 6e-14
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
 Frame = -3

Query: 528 NPVILYCH--GTAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAKHPLSK 355
           NP++++ H  GT VA +       LC +  S + R P  ++LE+PF N++DEI  HP +K
Sbjct: 251 NPIVVWGHSLGTGVATH-------LCAKLASLRERAPRGVILESPFTNIRDEIRMHPFAK 303

Query: 354 LVSWLPYFKNTFVKPFTDSPDYSFTTDEYLAVVPDLPILMLHSKGDRVVPYELAVKLQNK 175
           L   LP+F  T  +P   +    F +D ++      PI+++H++ D VVP+ L  +L   
Sbjct: 304 LYKNLPWFNFTISQPMYTN-RLRFESDVHVLEFRQ-PIMIIHAEDDVVVPFNLGYRLYRI 361

Query: 174 LVQSRKSSSAPFTF 133
            +  R  +S P  F
Sbjct: 362 ALDGRSRTSGPVEF 375



 Score = 43.2 bits (97), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -3

Query: 765 TVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLNIEFRSI-VDNFLIRLGIWHILPNSE 589
           T QR ++F   I +P+ L+   P S  +   RN  I  +    D   +R+G+WH+LP++ 
Sbjct: 58  TFQRGILFLTFIKYPKGLDLTKPESVGLYATRNFYITVKDHDQDEDGVRVGVWHVLPSNA 117

Query: 588 IK 583
           ++
Sbjct: 118 VR 119


>AE013599-2823|AAF57599.2|  393|Drosophila melanogaster CG15111-PA,
           isoform A protein.
          Length = 393

 Score = 75.8 bits (178), Expect = 6e-14
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
 Frame = -3

Query: 528 NPVILYCH--GTAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAKHPLSK 355
           NP++++ H  GT VA +       LC +  S + R P  ++LE+PF N++DEI  HP +K
Sbjct: 233 NPIVVWGHSLGTGVATH-------LCAKLASLRERAPRGVILESPFTNIRDEIRMHPFAK 285

Query: 354 LVSWLPYFKNTFVKPFTDSPDYSFTTDEYLAVVPDLPILMLHSKGDRVVPYELAVKLQNK 175
           L   LP+F  T  +P   +    F +D ++      PI+++H++ D VVP+ L  +L   
Sbjct: 286 LYKNLPWFNFTISQPMYTN-RLRFESDVHVLEFRQ-PIMIIHAEDDVVVPFNLGYRLYRI 343

Query: 174 LVQSRKSSSAPFTF 133
            +  R  +S P  F
Sbjct: 344 ALDGRSRTSGPVEF 357



 Score = 43.2 bits (97), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -3

Query: 765 TVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLNIEFRSI-VDNFLIRLGIWHILPNSE 589
           T QR ++F   I +P+ L+   P S  +   RN  I  +    D   +R+G+WH+LP++ 
Sbjct: 40  TFQRGILFLTFIKYPKGLDLTKPESVGLYATRNFYITVKDHDQDEDGVRVGVWHVLPSNA 99

Query: 588 IK 583
           ++
Sbjct: 100 VR 101


>BT024279-1|ABC86341.1| 1108|Drosophila melanogaster IP14124p
           protein.
          Length = 1108

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -3

Query: 387 KDEIAKHPLSKLVSWLPYFKNTFVKPFTDSPDYSFTTDEYLAVVPDLPILMLHSKG 220
           KD I    +   +SWL ++K    + ++    Y+ + ++++ VV DLP+  LH+ G
Sbjct: 108 KDYILCQDIGHQLSWLTWYKEDLHEGYS----YACSVEDFIEVVKDLPLEDLHTNG 159


>AE014296-2211|AAF49869.1| 1371|Drosophila melanogaster CG14120-PA
           protein.
          Length = 1371

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -3

Query: 387 KDEIAKHPLSKLVSWLPYFKNTFVKPFTDSPDYSFTTDEYLAVVPDLPILMLHSKG 220
           KD I    +   +SWL ++K    + ++    Y+ + ++++ VV DLP+  LH+ G
Sbjct: 371 KDYILCQDIGHQLSWLTWYKEDLHEGYS----YACSVEDFIEVVKDLPLEDLHTNG 422


>AY061005-1|AAL28553.1|  527|Drosophila melanogaster HL02088p
           protein.
          Length = 527

 Score = 32.7 bits (71), Expect = 0.59
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 180 SVT*PPTHRERLCPLSNVASKSEGPEPRRDTHQS*TNSRENR 305
           S+T PP +R RL   +N   ++  P   RD +   TN+RE R
Sbjct: 365 SLTPPPMNRSRLGGGNNRKGRNRSPRHERDNNSGSTNTREGR 406


>AF536543-1|AAN77184.1|  960|Drosophila melanogaster SR-related CTD
           associated factor 6 protein.
          Length = 960

 Score = 32.7 bits (71), Expect = 0.59
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 180 SVT*PPTHRERLCPLSNVASKSEGPEPRRDTHQS*TNSRENR 305
           S+T PP +R RL   +N   ++  P   RD +   TN+RE R
Sbjct: 798 SLTPPPMNRSRLGGGNNRKGRNRSPRHERDNNSGSTNTREGR 839


>AE014296-2867|AAX52741.1|  960|Drosophila melanogaster CG33522-PA,
           isoform A protein.
          Length = 960

 Score = 32.7 bits (71), Expect = 0.59
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 180 SVT*PPTHRERLCPLSNVASKSEGPEPRRDTHQS*TNSRENR 305
           S+T PP +R RL   +N   ++  P   RD +   TN+RE R
Sbjct: 798 SLTPPPMNRSRLGGGNNRKGRNRSPRHERDNNSGSTNTREGR 839


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,997,043
Number of Sequences: 53049
Number of extensions: 691681
Number of successful extensions: 2159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2156
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3675273108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)