Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b13
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical ...    65   6e-11
Z54281-7|CAA91050.2|  202|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    29   5.0  
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    29   5.0  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    28   6.7  
AC006636-2|AAF39797.1|  325|Caenorhabditis elegans Hypothetical ...    28   8.8  

>AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.2 protein.
          Length = 345

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 41/132 (31%), Positives = 73/132 (55%), Gaps = 4/132 (3%)
 Frame = -3

Query: 579 VADLKTNNTFHELKNSRNPVILYCH--GTAVAANFVSNLEELCQERGSEKLRLPDALVLE 406
           V D KT   + +    + PVI++ H  GT V+   V +L        S + + P  L+LE
Sbjct: 166 VEDTKTVYEWLKENCGKTPVIVWGHSMGTGVSCKLVQDL--------SREQQPPCGLILE 217

Query: 405 APFNNLKDEIAKHPLSKLVSWLPYF--KNTFVKPFTDSPDYSFTTDEYLAVVPDLPILML 232
           +PFNNLKD +  HP+  + SW+  F   +  ++P  +S   +  +D+ + +V   PI++L
Sbjct: 218 SPFNNLKDAVTNHPIFTVFSWMNDFMVDHIIIRPL-NSVGLTMRSDKRIRLV-SCPIIIL 275

Query: 231 HSKGDRVVPYEL 196
           H++ D+++P +L
Sbjct: 276 HAEDDKILPVKL 287



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
 Frame = -3

Query: 732 INFPR--NLNYDSPSSCSV-TCGRNLNIEFRSIVDNFLIRLGIWHILPNS---EIKDVAD 571
           +NF R  N +Y+  +S +V + GR+L++  +S       R+G+WHILPN    E +    
Sbjct: 44  LNFRRLPNTDYNDLASNNVKSIGRSLHLPGKSG------RIGVWHILPNKLSLEWRTEGK 97

Query: 570 LKTNNTFHE-LKNSRNPVILYCHGTAVAANFVSNLE 466
             T   F + +++S N +I Y HG +    F   +E
Sbjct: 98  HPTERDFDDMMRDSENQIIFYAHGNSFDRTFYHRVE 133


>Z54281-7|CAA91050.2|  202|Caenorhabditis elegans Hypothetical
           protein F46C5.2 protein.
          Length = 202

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = -3

Query: 579 VADLKTNNTFHELKNSRNPVILYCHGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAP 400
           +ADL+ N    EL+  R   +L C  T      V N  + C +  S   RLP A   E  
Sbjct: 92  LADLEMNRRTSELRMRRVGAVLLCEDTFNQTTCVCNRRDKCNDIHS---RLPFATYAEGL 148

Query: 399 FNNL 388
           F  +
Sbjct: 149 FRGV 152


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 237 SKSEGPEPRRDTHQS*TNSREN-R*TVLRTYS*SRAARKPVSIEDVWRFRPS 389
           S+S  PE RRD     T  +EN   + LR     + A +  S +D W  +P+
Sbjct: 380 SRSRSPEKRRDKEDRKTEKKENENESSLREKLLEKKAARKDSSDDEWEEKPT 431


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 237 SKSEGPEPRRDTHQS*TNSREN-R*TVLRTYS*SRAARKPVSIEDVWRFRPS 389
           S+S  PE RRD     T  +EN   + LR     + A +  S +D W  +P+
Sbjct: 380 SRSRSPEKRRDKEDRKTEKKENENESSLREKLLEKKAARKDSSDDEWEEKPT 431


>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = -3

Query: 315 KPFTDSPDYSFT-TDEYLAVVPDLPILMLHSKG--DRVVPYE--LAVKLQNKLVQSRKSS 151
           +P T S ++     D+YL V P+L ++ L+  G  D + P E  L  KL N +  S K+ 
Sbjct: 72  EPVTFSTEHLLQRADQYLEVFPELQVIGLYCAGEDDNLTPEEKPLLSKLTNAVRNSEKAG 131

Query: 150 SAPFT 136
               T
Sbjct: 132 QIDAT 136


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 581 SLISEFGSICQIPNLMRKLSTIERNSMLRFLPHVTLQ 691
           S++  F SI Q+  + + LSTIERN +   L    +Q
Sbjct: 195 SIVCNFLSIMQLKLMKKNLSTIERNLLFSTLASSVIQ 231


>AC006636-2|AAF39797.1|  325|Caenorhabditis elegans Hypothetical
           protein F40C5.1 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
 Frame = -3

Query: 594 SEIKDVADLKTNNTFHELKNSRNPVILYCHGTAVAA------NFVSNLE--EL------C 457
           S+++ V + K  N+F++++NSRN  +   H  A AA      NF   +E  EL       
Sbjct: 152 SDMRCVVE-KIYNSFYDIQNSRNETLKIGHIEAHAAPVTWNCNFHQGIEKWELLAMGSDT 210

Query: 456 QERGSEKLRLPDALVLEAPFNNLKDEIAKHPLS 358
           +ER S   RL D L  +    +L ++I K+ LS
Sbjct: 211 EERVSSAARLADILRKQGVRGSLVEKIHKNILS 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,159,590
Number of Sequences: 27780
Number of extensions: 362421
Number of successful extensions: 1103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)