Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14b09
(781 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical p... 348 2e-96
D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2 pr... 348 2e-96
Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical pr... 328 2e-90
D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1 pr... 323 8e-89
U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical p... 209 2e-54
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 29 3.7
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 29 3.7
Z77657-1|CAB01144.1| 130|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL132952-11|CAB61148.1| 136|Caenorhabditis elegans Hypothetical... 28 6.5
Z82053-1|CAB04834.1| 233|Caenorhabditis elegans Hypothetical pr... 28 8.6
>U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical
protein F01F1.12a protein.
Length = 366
Score = 348 bits (856), Expect = 2e-96
Identities = 172/245 (70%), Positives = 193/245 (78%)
Frame = -2
Query: 780 GIKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQ 601
GIK+D GVVPL G+ E TTQGLD LA+R A +KK GC FAKWRCVL IG +TPS+ +
Sbjct: 109 GIKLDLGVVPLAGTIGEGTTQGLDKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGML 168
Query: 600 ENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLE 421
ENANVLARYASICQ+ +VPIVEPEVL DGEHDL RAQKVTE VLA VYKAL DHHVYLE
Sbjct: 169 ENANVLARYASICQANGLVPIVEPEVLCDGEHDLARAQKVTEQVLAFVYKALADHHVYLE 228
Query: 420 GTLLKPNMVTAGQSCKKTYTPNDVARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLN 241
GTLLKPNMVT GQS + + ATVTAL R VPAAVPG+TFLSGGQSE +A+ +LN
Sbjct: 229 GTLLKPNMVTPGQSSASKASHEAIGLATVTALRRGVPAAVPGITFLSGGQSELDATANLN 288
Query: 240 AINAVDLKRPWVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGQASLGKYVA 61
AIN+V L +PW LTFSYGRALQASVL+AWGGK ENI A Q+ L+ R+KANG ASLGKY
Sbjct: 289 AINSVQLGKPWKLTFSYGRALQASVLKAWGGKDENIAAAQKTLLHRSKANGDASLGKYAG 348
Query: 60 GSVTG 46
G
Sbjct: 349 EDAAG 353
>D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2
protein.
Length = 366
Score = 348 bits (856), Expect = 2e-96
Identities = 172/245 (70%), Positives = 193/245 (78%)
Frame = -2
Query: 780 GIKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQ 601
GIK+D GVVPL G+ E TTQGLD LA+R A +KK GC FAKWRCVL IG +TPS+ +
Sbjct: 109 GIKLDLGVVPLAGTIGEGTTQGLDKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGML 168
Query: 600 ENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLE 421
ENANVLARYASICQ+ +VPIVEPEVL DGEHDL RAQKVTE VLA VYKAL DHHVYLE
Sbjct: 169 ENANVLARYASICQANGLVPIVEPEVLCDGEHDLARAQKVTEQVLAFVYKALADHHVYLE 228
Query: 420 GTLLKPNMVTAGQSCKKTYTPNDVARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLN 241
GTLLKPNMVT GQS + + ATVTAL R VPAAVPG+TFLSGGQSE +A+ +LN
Sbjct: 229 GTLLKPNMVTPGQSSASKASHEAIGLATVTALRRGVPAAVPGITFLSGGQSELDATANLN 288
Query: 240 AINAVDLKRPWVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGQASLGKYVA 61
AIN+V L +PW LTFSYGRALQASVL+AWGGK ENI A Q+ L+ R+KANG ASLGKY
Sbjct: 289 AINSVQLGKPWKLTFSYGRALQASVLKAWGGKDENIAAAQKTLLHRSKANGDASLGKYAG 348
Query: 60 GSVTG 46
G
Sbjct: 349 EDAAG 353
>Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical
protein T05D4.1 protein.
Length = 365
Score = 328 bits (807), Expect = 2e-90
Identities = 162/239 (67%), Positives = 185/239 (77%), Gaps = 1/239 (0%)
Frame = -2
Query: 780 GIKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQ 601
GIKVDKGVVP+ G+ E TTQGLDDL RCAQYKKDG FAKWRCV KI TPS A++
Sbjct: 106 GIKVDKGVVPMAGTIGEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKISSTTPSVTALK 165
Query: 600 ENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLE 421
E A+ LARYASICQ +VPIVEPE+LPDGEH L R QK+TE VL+ VY ALN+HHV+LE
Sbjct: 166 EIASNLARYASICQQNGLVPIVEPEILPDGEHCLARGQKITETVLSYVYHALNEHHVFLE 225
Query: 420 GTLLKPNMVTAGQSCKKTYTPN-DVARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHL 244
GTLLKPNMVT+GQS N D+ ATVTAL R VP+AVPGV FLSGGQSEE+A+++L
Sbjct: 226 GTLLKPNMVTSGQSFTGEKPSNADIGLATVTALQRGVPSAVPGVVFLSGGQSEEDATLNL 285
Query: 243 NAINAVDLKRPWVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGQASLGKY 67
NAIN V K+PW LTFSYGRALQAS L W GK ENI A Q+ L+ RA+ N AS+GKY
Sbjct: 286 NAINQVSGKKPWALTFSYGRALQASCLAKWAGKDENIAAAQEVLLHRAQVNSLASVGKY 344
>D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1
protein.
Length = 366
Score = 323 bits (794), Expect = 8e-89
Identities = 161/240 (67%), Positives = 185/240 (77%), Gaps = 2/240 (0%)
Frame = -2
Query: 780 GIKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQ 601
GIKVDKGVVP+ G+ E TTQGLDDL RCAQYKKDG FAKWRCV KI TPS A++
Sbjct: 106 GIKVDKGVVPMAGTIGEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKISSTTPSVTALK 165
Query: 600 ENA-NVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYL 424
E A N+ +RYASICQ +VPIVEPE+LPDGEH L R QK+TE VL+ VY ALN+HHV+L
Sbjct: 166 EIASNLGSRYASICQQNGLVPIVEPEILPDGEHCLARGQKITETVLSYVYHALNEHHVFL 225
Query: 423 EGTLLKPNMVTAGQSCKKTYTPN-DVARATVTALLRTVPAAVPGVTFLSGGQSEEEASVH 247
EGTLLKPNMVT+GQS N D+ ATVTAL R VP+AVPGV FLSGGQSEE+A+++
Sbjct: 226 EGTLLKPNMVTSGQSFTGEKPSNADIGLATVTALQRGVPSAVPGVVFLSGGQSEEDATLN 285
Query: 246 LNAINAVDLKRPWVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGQASLGKY 67
LNAIN V K+PW LTFSYGRALQAS L W GK ENI A Q+ L+ RA+ N AS+GKY
Sbjct: 286 LNAINQVSGKKPWALTFSYGRALQASCLAKWAGKDENIAAAQEVLLHRAQVNSLASVGKY 345
>U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical
protein F01F1.12b protein.
Length = 259
Score = 209 bits (510), Expect = 2e-54
Identities = 102/134 (76%), Positives = 111/134 (82%)
Frame = -2
Query: 780 GIKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQ 601
GIK+D GVVPL G+ E TTQGLD LA+R A +KK GC FAKWRCVL IG +TPS+ +
Sbjct: 109 GIKLDLGVVPLAGTIGEGTTQGLDKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGML 168
Query: 600 ENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLE 421
ENANVLARYASICQ+ +VPIVEPEVL DGEHDL RAQKVTE VLA VYKAL DHHVYLE
Sbjct: 169 ENANVLARYASICQANGLVPIVEPEVLCDGEHDLARAQKVTEQVLAFVYKALADHHVYLE 228
Query: 420 GTLLKPNMVTAGQS 379
GTLLKPNMVT GQS
Sbjct: 229 GTLLKPNMVTPGQS 242
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 423 RGTRGGRSAPYTRRPERPQSPSGRGPGRARHQVRLRARQLARCVGSDRWRRSGR 584
R RS +R R +SP+ R +RH+ R + R +R R R SGR
Sbjct: 177 RSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSSGR 230
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 423 RGTRGGRSAPYTRRPERPQSPSGRGPGRARHQVRLRARQLARCVGSDRWRRSGR 584
R RS +R R +SP+ R +RH+ R + R +R R R SGR
Sbjct: 177 RSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSSGR 230
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 411 GVSPRGTRGGRSAPYTRRPERPQSPSGRG--PGRARHQ 518
G P G G R P PE PQ P+GR PG++ Q
Sbjct: 256 GERPLGRPGPRGPPGEAGPEGPQGPTGRDAYPGQSGPQ 293
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 411 GVSPRGTRGGRSAPYTRRPERPQSPSGRG--PGRARHQ 518
G P G G R P PE PQ P+GR PG++ Q
Sbjct: 256 GERPLGRPGPRGPPGEAGPEGPQGPTGRDAYPGQSGPQ 293
>Z77657-1|CAB01144.1| 130|Caenorhabditis elegans Hypothetical
protein F08H9.2 protein.
Length = 130
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 441 RSAPYTRRPERPQSPSGRGPGRARHQVRLRARQLARCVGSDRWR-RSGR 584
R+ TRR ++PS R+R + R R+R +R S R R RS R
Sbjct: 47 RTNSLTRRRSSTKAPSSARQSRSRSRSRSRSRSKSRSTSSRRSRSRSAR 95
>AL132952-11|CAB61148.1| 136|Caenorhabditis elegans Hypothetical
protein Y51H4A.16 protein.
Length = 136
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = -2
Query: 777 IKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQE 598
++V + V L + E T + L LAQ+ ++ +D W+C+ G +T + ++I+E
Sbjct: 22 VRVVERAVALHKNSKEKTNEKL--LAQKSGKWARDAESRNTWKCIRAPGAHTHTGESIKE 79
Query: 597 N 595
+
Sbjct: 80 S 80
>Z82053-1|CAB04834.1| 233|Caenorhabditis elegans Hypothetical
protein T26E3.1 protein.
Length = 233
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +3
Query: 648 NATWRSGSRPSCTGRSAGR---GRPDPGWCIRL 737
N G RP+ G AG RP+ GWC+R+
Sbjct: 48 NGNGNGGGRPTNGGCDAGWRRFNRPNGGWCVRV 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,997,774
Number of Sequences: 27780
Number of extensions: 390866
Number of successful extensions: 1513
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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