Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b09
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.8  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   2.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.4  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   7.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.7  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 95  ALARLISSCCPARMFSVFPPQARSTEAWR 181
           A  R++ +CCP R+   + P  R   + R
Sbjct: 400 AFVRILCACCPGRVRRRYQPAFRCKPSQR 428


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 450 PYTRRPERPQSPSGRGPGRARHQVRLRARQLAR 548
           P TRR +R  +     P   R +    A QLAR
Sbjct: 2   PRTRRVKRSHNGKNGSPEEKRPRTAFSAEQLAR 34


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -2

Query: 420 GTLLKPNMVTAGQSCKKTYTPNDVARATVTALLRTVPAAVPGVTFLSG 277
           GT+       A  +  K  TP  +A  + TA     P +VP  + ++G
Sbjct: 18  GTIASVVAGAASLTLVKAETPEHLAGTSTTAAATPTPPSVPVGSAVAG 65


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 235 QRCGPQEALGSDVQLRARPPGFGAPRLGREDREHS 131
           +RC    +   ++    R PGFG   L  ++R  S
Sbjct: 471 KRCKDLASFMGNLLQETRTPGFGKDVLATDERSFS 505


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 235 QRCGPQEALGSDVQLRARPPGFGAPRLGREDREHS 131
           +RC    +   ++    R PGFG   L  ++R  S
Sbjct: 177 KRCKDLASFMENLLQETRTPGFGKDVLATDERSFS 211


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 634 WPQHPLVP 611
           WPQH L+P
Sbjct: 583 WPQHMLIP 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,559
Number of Sequences: 438
Number of extensions: 4752
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)