Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b08
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0150 + 1256029-1256137,1256206-1256247,1256345-1256455,125...    29   4.4  
07_03_1433 + 26513728-26514135,26525534-26526280                       28   5.8  
04_04_0684 - 27241306-27241665                                         28   7.6  

>11_01_0150 +
           1256029-1256137,1256206-1256247,1256345-1256455,
           1256538-1256600,1256678-1256910,1256999-1257223,
           1257319-1257411,1257493-1257591,1257840-1257956
          Length = 363

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 644 SEQQATEKVKIDIKLLDLYENSEPDVYVRTSTEEEHGHYSYLW 516
           S+   TE+  I   + D +EN +PD+ +    +E   H   LW
Sbjct: 171 SDISNTEQEHIFASITDKFENEDPDIKIDVYKDEIMEHAKSLW 213


>07_03_1433 + 26513728-26514135,26525534-26526280
          Length = 384

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 388 NPAAPKRTAAWYTSSCPKTSQV 323
           +P AP     +Y+SSCPK  Q+
Sbjct: 85  SPPAPGLRVGYYSSSCPKAEQI 106


>04_04_0684 - 27241306-27241665
          Length = 119

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 200 WLTLLLARCCCGGRDCSHR 256
           WL +  + CC GG DC HR
Sbjct: 6   WLGVDSSGCCGGGCDCGHR 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,445
Number of Sequences: 37544
Number of extensions: 321383
Number of successful extensions: 877
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)