Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14b06
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 42 1e-04
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 41 2e-04
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 40 5e-04
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 34 0.027
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch... 33 0.046
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 33 0.061
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.33
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 29 0.57
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 0.57
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 29 1.00
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 28 1.7
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 28 1.7
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 27 2.3
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 27 2.3
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 27 3.0
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 27 4.0
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 4.0
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 27 4.0
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.0
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.3
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 7.0
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 25 9.3
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 9.3
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 9.3
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 25 9.3
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 41.5 bits (93), Expect = 1e-04
Identities = 31/177 (17%), Positives = 75/177 (42%), Gaps = 3/177 (1%)
Frame = -1
Query: 688 CSLCPKAFASYSNHYKHMLRVHNVQPKSKSNLQKNIKDPSKKECHDKDTNEEKQSVVDQK 509
CS+C + + + + + + + +N+Q+N+ + D+ +++ ++ ++
Sbjct: 299 CSVCGRKRLAIEEELEVLYDAYYEELEQYANIQRNLANTESVNASDEGSDKSQKGIISDS 358
Query: 508 PLEQTIMDTDDSTVESIDPIALEKELQMFNETNNGDTVDGPQLADIQPDNSAVAVFDFQS 329
P +I ++ +S++ + EL N + + ++ L + DN
Sbjct: 359 PKLLSI-PLNNVPSKSLNDDITQDELNSSNADVDEEVIETTSLEEKNVDNQEFVTSISNG 417
Query: 328 NNSTFQTSMVP---PEYGPDFVNKAIESSAFSGDYIDLDDHLMPHIDPLLTIKHELL 167
N + TS P P + P + +KA E +++ D + L +LT+ +LL
Sbjct: 418 NQTLEDTSHSPQTQPPFQPPYPSKADEKNSYHSDLYNFGSSLTVK-GGILTVADDLL 473
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 787 GSSKCTYXQ-KKHSSKDYDXQQHVNIHIGLLPYKCSLCPKAFASYSNHYKH 638
G+ CT+ K ++ Y+ + H+N H P++CS+C K+FA + +H
Sbjct: 568 GNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRH 618
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 787 GSSKCTYXQ-KKHSSKDYDXQQHVNIHIGLLPYKCSLCPKAFASYSNHYKHMLRVH 623
G C Y K ++ Y+ + H+ H+ PY+C LC F + + +H LR+H
Sbjct: 441 GKYVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRH-LRIH 495
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 33.9 bits (74), Expect = 0.027
Identities = 21/105 (20%), Positives = 49/105 (46%)
Frame = -1
Query: 727 QHVNIHIGLLPYKCSLCPKAFASYSNHYKHMLRVHNVQPKSKSNLQKNIKDPSKKECHDK 548
Q+ N+H+ +P + P + S+ + +Q Q+N+ + + +D+
Sbjct: 249 QNRNVHLETVPESYPVPPSGYPLTSSTCVSSIS-QPIQSTDCQKAQENLSNNKQMSSNDQ 307
Query: 547 DTNEEKQSVVDQKPLEQTIMDTDDSTVESIDPIALEKELQMFNET 413
D + KQ++ D P I+ ++T++S+ +++ Q+ N T
Sbjct: 308 DIDPFKQAITDLPPSFVNIVLEMNATIQSLSNQCQQRDKQIENIT 352
>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 33.1 bits (72), Expect = 0.046
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = -1
Query: 685 SLCPKAFASYSNHYKHMLRVHNVQPKSKSNLQKNIKDPSKKECHDKDTNEEKQSVVDQKP 506
S P + +Y++ L ++P + L K+IK+ K T EEK+ VV +KP
Sbjct: 40 SRTPYEWLTYADKCVIELSKSELKPNEEKELPKDIKEDCK-------TVEEKEKVVPRKP 92
Query: 505 LEQTIMDTDDS 473
L+ ++ DDS
Sbjct: 93 LQSEGINEDDS 103
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 32.7 bits (71), Expect = 0.061
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Frame = -1
Query: 784 SSKCTYXQKKHSSKDYDXQQHVNIHIGLLPYKCSL--CPKAFASYSNHYKHM---LRVHN 620
S +C + ++ +++ + H+ H G P++CS C K F +H+ LR
Sbjct: 3 SYECPFCKRVFHRQEHQVR-HIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTHLRKAL 61
Query: 619 VQPKSKSNLQKNIKDPSKKECHDKDTNEEKQSVVDQ 512
V P+ ++ + K P K DK T +E +Q
Sbjct: 62 VTPEQTLDVNLH-KAPDSKPEGDKSTGQEADKSQNQ 96
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 775 CTYXQ--KKHSSKDYDXQQHVNIHIGLLPYKCSLCPKAFASYSNHYKHMLRVH 623
CTY K + K++ ++H H + + CS C +AFA +H+ ++H
Sbjct: 28 CTYPDCPKSFTRKEH-LRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 29.5 bits (63), Expect = 0.57
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 697 PYKCSLCPKAFASYSNHYKHMLRVH 623
PYKC LC KAF + +H +R H
Sbjct: 25 PYKCPLCTKAFYRLEHQTRH-IRTH 48
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 29.5 bits (63), Expect = 0.57
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = -1
Query: 778 KCTYXQKKHSSKDYDXQQHVNIHIGLLPYKCSL--CPKAFASYSNHYKHMLRVH---NVQ 614
KC + + + H+ H+ + C + C K F++Y + +KH+ H
Sbjct: 1034 KCLWASCDMVLPSEEFEMHLRGHLNNIRLNCEVSNCKKCFSNYEDMFKHLQHSHLPFKFT 1093
Query: 613 PKSKSNLQK-NIKDPSKK 563
P+S ++ N+K+ +++
Sbjct: 1094 PESFIKIRNGNVKEEARR 1111
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.7 bits (61), Expect = 1.00
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 3/144 (2%)
Frame = -1
Query: 646 YKHMLRVHNVQPKSKSNLQKNIKDPSKKECHDKDTN---EEKQSVVDQKPLEQTIMDTDD 476
Y+ L H KS + + +I +K K++N E++ S+ ++ LE+ + +DD
Sbjct: 304 YEKELNDHVNIVKSSTYIPISIPTQKQKPTLPKNSNLINEDEFSIANRARLEREYLQSDD 363
Query: 475 STVESIDPIALEKELQMFNETNNGDTVDGPQLADIQPDNSAVAVFDFQSNNSTFQTSMVP 296
+ + + +E + ++ NE NG T+ P N + F++ S N P
Sbjct: 364 AEEQEMLGDYVEGQTRVVNE--NGVTLKKPHYF-----NRVLLGFEWNSYNQAHFNEAHP 416
Query: 295 PEYGPDFVNKAIESSAFSGDYIDL 224
P KA++ F+ Y DL
Sbjct: 417 PP-------KAVQGYRFNVFYPDL 433
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = -1
Query: 661 SYSNHYKHMLRVHNVQPKSKSNLQKNIKDPSKKECHDKDTNEEKQSVVDQKPLEQTIMD 485
SY +H HN S+SN+ ++++ + + H + E QS Q+ + ++M+
Sbjct: 682 SYDELEQHHANFHNKAGISQSNIPPHLQEHRQSQQHFQQDIEALQSQQQQQATKNSLME 740
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = -1
Query: 313 QTSMVPPEYGPDFVNKAIESSAFSGDYIDLDDHLMPHIDPL 191
Q S+V E+ + + KA+ES+A S +D DD L+P ++ L
Sbjct: 218 QVSLVVEEFEEN-LKKALESTAKSLPRLDEDDRLLPILNHL 257
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/33 (27%), Positives = 14/33 (42%)
Frame = +1
Query: 355 HYCRAGCRQVGVHQQCPRCWSH*TSAIPSQERW 453
H C + +C CW H T+ + + RW
Sbjct: 346 HLCMEATPSLACANKCTFCWRHGTNPVGTSWRW 378
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 2.3
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = -1
Query: 547 DTNEEKQSVV-DQKPLE-QTIMDTDDSTVESIDPIALEKELQMFNETNNGDTVDGPQLAD 374
DTN + Q + K L+ Q +MD D S S PI+++ ++ N+ N+ +
Sbjct: 185 DTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRNSSHAL------- 237
Query: 373 IQPDNSAVAVFDFQSNNSTFQTSMVPPE 290
S A F+ +S +S + M PP+
Sbjct: 238 -----SLFAEFEHESYDSINPSGMSPPK 260
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 288 YSGGTMDVWNVELFDWKSKTATALLSGWMSASWGPSTVS 404
+ GGT+ V++ +S TALLSGW+ S P +S
Sbjct: 81 HPGGTLRVYSTADEADESFEMTALLSGWLIESKSPWILS 119
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 26.6 bits (56), Expect = 4.0
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Frame = -1
Query: 607 SKSNLQKN-IKDPSKKECHDKDTNEEK---QSVVDQKPLEQTIMDTDDSTVESIDPIALE 440
S+S+ +N IK S + H +K +SV + K + + + V P+ LE
Sbjct: 150 SRSSTPRNSIKSNSSNQGHGDIPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLE 209
Query: 439 KELQMFNETN----NGDTVDGPQLADIQPDNSAVAVFDFQSNNSTFQTSMVPP 293
N ++ N + + +++A F F ++S+FQ PP
Sbjct: 210 LPTHSHNSSDTSFTNSIVSSVSDMVGLGEGINSIASFGFSEDSSSFQDIKTPP 262
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = -1
Query: 604 KSNLQKNIKDPSKKECHDKDTNEEKQSVVDQKPLEQTIMDTDDSTVESIDPIALEKEL 431
+ +LQK ++ S K+ + E ++V++ L+ + +D+ VES+D A +KEL
Sbjct: 53 EEDLQKELQKESIKD-ESSAKSSETENVLEFATLDSK-RNVNDTEVESMDSQAYKKEL 108
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -1
Query: 610 KSKSNLQKNIKDPSKKECHDKDTNEEKQSVVDQKPLEQTIMDTDDSTVE-SIDPIALEKE 434
K S+ Q+N + K E K +K + ++K E T DD + S D + K+
Sbjct: 11 KDISSKQENSSEVPKAEEAGKVVESQKDTTSEEKKEETTEKKEDDGKKDLSFDEAEVLKQ 70
Query: 433 LQM-FNETN 410
++ F++TN
Sbjct: 71 VEFYFSDTN 79
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 4.0
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Frame = -1
Query: 784 SSKCTYXQKKHSSKD--YDXQQHVNIHI---GLLPYKCS---LCPKAF-ASYSNHYKHML 632
S + Y K+H+S Y + N I GL K + L K F A+YS ++K +
Sbjct: 331 SKEAMYIVKRHNSSQSFYGNRSTTNFSIINSGLYLKKDAAKNLLAKQFDATYSYYHKDL- 389
Query: 631 RVHNVQPKSKSNLQKNIKDPSKKECHDKD 545
+V K SNL+K ++ K C ++
Sbjct: 390 -EESVHQKLNSNLEKRVEKYIKHSCSQRN 417
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 553 DKDTNEEKQSVVDQKPLEQTIMDTDDSTVESIDPIALEKELQMFNETNNGDTVDGPQ 383
D+D +E V +E+ M+ DDS VE DPI +E+ +M + N + P+
Sbjct: 738 DEDDQDENDQVTK---VEEEHMEDDDS-VEEFDPI-IEERQRMKRKANRPANIIPPK 789
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 7.0
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = -1
Query: 706 GLLPYKCSLCPKAFASYSNHYKHMLRVHNVQPKSKSNLQKNIKDPSKKECHDKDTNEEKQ 527
GLLP PK+ SN K V V+ ++KS K+ K P K + D N + +
Sbjct: 1276 GLLPASAIAPPKS----SNEKKSSNNVKAVEAETKS---KSEKSPKKNGTNISDANNKNE 1328
Query: 526 SVV 518
S V
Sbjct: 1329 SHV 1331
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 9.3
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Frame = -1
Query: 748 SKDYDXQQHV-NIHIGLLPYKCSLC----P-KAFASYSNHYKHMLRVHNVQPKSKSNLQK 587
+KD + +HV N+H L +L P F Y N+ +H N+ ++ L
Sbjct: 519 TKDRNIARHVINLHTNLQESSETLAIGEIPFDKFRRYINYCRHKC-APNLDAEAAEKLSS 577
Query: 586 NIKDPSKKECH--DKDTNEEKQSVVDQKPLEQTIMDTDDSTVESIDPIALE 440
+K H ++D+N + + LE I T+ S+ PIA E
Sbjct: 578 QFV-AIRKRVHQSEQDSNSRSTIPITVRQLEAIIRITESLAKMSLSPIASE 627
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.4 bits (53), Expect = 9.3
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 246 NAELSMALFTKSGPYSGGTMDVWNVELFDWKSKTATALLSGWMSASWGPS 395
NA L + +FT+ + GT NV L D + T T LL W PS
Sbjct: 631 NATLGVQIFTEESEHPFGTA---NVSLQDLFAATKTGLL--WFPLQHAPS 675
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 460 YSLLYYHPYPLWFALTAFDQL 522
YS +PYP W A + F QL
Sbjct: 443 YSQKQSNPYPFWHAKSTFKQL 463
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 247 FSGDYIDLDDHLMPHIDPLL 188
+ G+YIDLDD +D LL
Sbjct: 159 YGGNYIDLDDGCRQRLDSLL 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,686
Number of Sequences: 5004
Number of extensions: 70666
Number of successful extensions: 272
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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