Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14b06
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 33 0.26
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 31 0.79
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524 31 1.4
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 30 1.8
06_03_1229 + 28571131-28571235,28572108-28572656,28572749-285729... 30 2.4
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 30 2.4
02_02_0433 - 10178497-10178844,10180394-10180444,10181201-101812... 29 3.2
05_01_0566 - 4940743-4940980,4941418-4941564,4941655-4941854 29 4.2
07_03_1104 + 24001594-24002139 29 5.5
02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042 29 5.5
02_01_0516 + 3727742-3727936,3729115-3729192,3729292-3729552,372... 29 5.5
09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586... 28 7.3
05_07_0307 - 29111643-29112104,29112222-29113214 28 7.3
05_05_0022 + 21592403-21593083,21593720-21594208 28 7.3
04_03_0735 + 19141038-19143227 28 7.3
02_05_1268 - 35345283-35345462,35345577-35345636,35345719-353460... 28 7.3
02_03_0378 + 18327622-18329826 28 7.3
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 28 7.3
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 28 9.7
03_01_0540 - 4055635-4055743,4055829-4055981,4056037-4056104,405... 28 9.7
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -1
Query: 778 KCTYXQKKHSSK-DYDXQQHVNIHIGLLPYKCSL--CPKAFASYSNHYKHMLRVHNVQPK 608
KCT+ K + K + +H+ +H G+ PY+C C + F S+ +H + + K
Sbjct: 1284 KCTWKGCKKAFKWPWARTEHMRVHTGVRPYECQEPGCGQTFRFVSDFSRHKRKTGHSSDK 1343
Query: 607 SKSN 596
+ N
Sbjct: 1344 RRKN 1347
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 31.5 bits (68), Expect = 0.79
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -1
Query: 727 QHVNIHIGLLPYKCSL--CPKAFASYSNHYKH 638
+H+ +H G PYKCS C ++F S++ +H
Sbjct: 866 EHIRVHTGERPYKCSAPDCGQSFRYVSDYSRH 897
>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
Length = 651
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 739 YDXQQHVNIHIGLLPYKCSL--CPKAFASYSNHYKHMLR 629
+D +H +H G PYKC+ C K + S+ +H R
Sbjct: 608 WDRGEHFQVHAGKRPYKCTTPGCSKIYKFVSDFTRHKRR 646
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 159 PPGSRPSLPHCTRLTMKTSQTPAGFPS*TLTYTNAVCLVSTKILL 25
PP S PSLP R+ ++ P ++ + A C + K+LL
Sbjct: 343 PPPSAPSLPEVERVILELLSLPPSPLQPAMSGSTATCFICNKLLL 387
>06_03_1229 +
28571131-28571235,28572108-28572656,28572749-28572918,
28573454-28573669,28573787-28573946
Length = 399
Score = 29.9 bits (64), Expect = 2.4
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Frame = -1
Query: 694 YKCSLCPKAFASYSNHYKHM-LRVHNVQPKSKSNL-------------QKNIKDPSKKEC 557
Y C+LC K + S H +H+ R H ++ + N + + PS E
Sbjct: 67 YSCALCGKEYRSSKAHAQHLNSRSHLMKASQEPNASIAGITIVKPRPERVQRRAPSAVE- 125
Query: 556 HDKDTNEEKQSV-VDQKPLEQTI-MDTDDSTVESIDPIALEKEL 431
D+D +EE++ V VD LE T M D+ + +S D I +EL
Sbjct: 126 EDEDEDEEEEWVEVDPSELESTSEMQVDEHSSKSDDEIDEFEEL 169
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 586 NIKDPSKKECHDKDTNEEKQSVVDQK 509
++KD ++KE D++TN EKQ + D K
Sbjct: 119 DVKDTAEKEDKDENTNTEKQELKDAK 144
>02_02_0433 -
10178497-10178844,10180394-10180444,10181201-10181263,
10181427-10181471,10181772-10181816,10183894-10183923,
10184182-10184289,10186459-10186524,10186595-10186624,
10187147-10187501,10189323-10189345,10191421-10191447,
10192131-10192210,10192367-10192550
Length = 484
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 459 LIPSLLRRNCRCSMRPTTGTLLMDPNLPTSSPTIVL*LSLISN 331
L+P N CS R + MDPN PT P + L++N
Sbjct: 350 LVPKYTTGNLLCSCRKIATPVDMDPNPPTGFPNMFNDPDLVTN 392
>05_01_0566 - 4940743-4940980,4941418-4941564,4941655-4941854
Length = 194
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -1
Query: 337 FQSNNSTFQTSMVPPEYGPDFVNKAIESSAFSGDYIDLD 221
F SN+ ++ +S Y P+F AI+++ FSG+ +D D
Sbjct: 13 FFSNSYSYSSSPFMASYTPEFSAAAIDANLFSGE-LDFD 50
>07_03_1104 + 24001594-24002139
Length = 181
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 700 LPYKCSLCPKAFASY 656
L ++CSLC KAFASY
Sbjct: 25 LHFRCSLCGKAFASY 39
>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
Length = 819
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -1
Query: 622 NVQPKSKSNLQKNIKDPSKKECHDKDTNEEKQSVVDQKPLEQTIMD 485
+ +PK + +N K +K C +K + K+ +Q P++ T++D
Sbjct: 706 STRPKRRKKKGRNAKS-QRKSCIEKGLQKTKKVQPEQSPIQYTMLD 750
>02_01_0516 +
3727742-3727936,3729115-3729192,3729292-3729552,
3729921-3730238,3730527-3730685,3730768-3730961,
3731644-3731647
Length = 402
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 330 DWKSKT--ATALLSGWMSASWGPSTVSPLLVSLNICNS 437
D +SKT A+A+ GWM GP + +L+ CN+
Sbjct: 280 DAESKTVAASAIPDGWMGLDVGPDAIKTSSEALDTCNT 317
>09_06_0349 +
22457820-22457987,22458202-22458246,22458597-22458650,
22458742-22458846,22458932-22459138,22459217-22459302,
22459423-22460330,22460566-22460624
Length = 543
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 691 KCSLCPKAFASYSNHYKHMLRVHNVQPKSKSNLQKN 584
KC+ CP+ F S N+ +H RVH + + + KN
Sbjct: 27 KCTKCPREFCSSINYRRH-TRVHRRTLQIEKDFLKN 61
>05_07_0307 - 29111643-29112104,29112222-29113214
Length = 484
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 595 LQKNIKDPSKKECHDKDTNEEKQSVVDQKPLE-QTIMDTDDST 470
L+ IKD S+ + KD N++ + D K +E + TD+ T
Sbjct: 442 LKSKIKDASETKAESKDANKQTEENKDSKAMENKNDSSTDECT 484
>05_05_0022 + 21592403-21593083,21593720-21594208
Length = 389
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 715 IHIGLLPYKCSLCPKAFASYSNHYKHM 635
I IG + + C +C KAF Y+N HM
Sbjct: 204 ILIGPVQFVCHVCNKAFNRYNNMQMHM 230
>04_03_0735 + 19141038-19143227
Length = 729
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 673 WGITNTCREVNQYEYSRVAVXHNLL 747
W N CR QYEY R+ + HNLL
Sbjct: 180 WTSCNRCRM--QYEYLRIYLNHNLL 202
>02_05_1268 -
35345283-35345462,35345577-35345636,35345719-35346042,
35346266-35346349,35346784-35346872,35346959-35347073,
35347534-35347660,35347743-35347882,35348010-35348071,
35348769-35348838,35348947-35349066,35349155-35349232,
35349738-35349968,35350110-35350220
Length = 596
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = -1
Query: 670 AFASYSNHYKHMLRVHNVQPKSKSNLQKNIKDPSKKECHDKDTNEEKQSVVDQKPLEQTI 491
AF Y+ Y + + V ++P++ +Q + + D+K + I
Sbjct: 398 AFGGYNGQYNNEIFVMKLKPRNL--VQPRLLQSPAAAAAAASVTAAYAVITDEKTRD--I 453
Query: 490 MDTDDSTVESIDPIALEKELQMFNETNNGDTVD-GPQLADIQPDNS 356
+ TDD V+ + P K++ + NG+ +LA+++ +NS
Sbjct: 454 VATDDLDVKRVQPSGSSKQITTELDALNGEKGKLESRLAEVRDENS 499
>02_03_0378 + 18327622-18329826
Length = 734
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 673 WGITNTCREVNQYEYSRVAVXHNLL 747
W N CR QYEY R+ + HNLL
Sbjct: 191 WTSCNRCRM--QYEYLRIYLNHNLL 213
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -1
Query: 727 QHVNIHIGLLPYKCSL--CPKAFASYSNHYKHMLRV-HNVQPKSKS 599
+H+ +H G PY C C + F S+ +H + H+V+ K K+
Sbjct: 1158 EHLRVHTGDRPYVCHEPGCAQTFRFVSDFSRHKRKTGHSVKKKKKA 1203
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 451 IALEKELQMFNETNNGDTVDGPQLADIQPDNSAVAVFDFQSNNSTF 314
+ L + MF + GDT GP+ PD+ +F NN++F
Sbjct: 357 VPLAVDTHMFVTVSMGDTFCGPEQTMCMPDDKG-TIFASSMNNASF 401
>03_01_0540 -
4055635-4055743,4055829-4055981,4056037-4056104,
4056486-4056580,4057180-4057241,4057371-4057410,
4058124-4059141,4059231-4059611,4059873-4059880,
4061005-4061067,4061416-4061719
Length = 766
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -2
Query: 186 PSSTNCCPGPPGSRPSLPHCTRLTMKTSQTPAGFPS*TLTYTNAVCLVS 40
PS CP PG+ P L C + S + P L + +C VS
Sbjct: 150 PSGCLLCPARPGAAPHLTRCAS-SASASASGTAHPPTRLHHLMTICPVS 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,409,975
Number of Sequences: 37544
Number of extensions: 477321
Number of successful extensions: 1546
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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