Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b06
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    40   2e-05
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    40   3e-05
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    29   0.037
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    29   0.037
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    27   0.26 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   7.4  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   9.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.8  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    21   9.8  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   9.8  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 757 KHSSKDYDXQQHVNIHIGLLPYKCSLCPKAFASYSNHYKHMLRVH 623
           K  ++D+  + H+ +H G  PY CS C + F   +N  +H LRVH
Sbjct: 17  KRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRH-LRVH 60



 Score = 27.1 bits (57), Expect = 0.20
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 730 QQHVNIHIGLLPYKCSLC 677
           ++H+ +H G  PY C LC
Sbjct: 54  RRHLRVHTGERPYACELC 71



 Score = 25.8 bits (54), Expect = 0.46
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 712 HIGLLPYKCSLCPKAFASYSNHYKHMLRVH 623
           H G  P++C  C K F +  +H K  +R+H
Sbjct: 4   HTGEKPFECPECHKRF-TRDHHLKTHMRLH 32


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -1

Query: 778 KCTYXQKKHSSKDYDXQQHVNIHIGLLPYKCSLCPKAFASYSNHYKHMLRVH 623
           +C Y  K  S K+ +   H  IH    PYKC +C +AF      ++HM R+H
Sbjct: 121 QCEYCSKSFSVKE-NLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHM-RIH 170



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -1

Query: 778 KCTYXQK--KHSSKDYDXQQHVNIHIGLLPYKCSLCPKAFASYSNHYKHMLRVH 623
           KC   ++  +HS K     +H+ IH G  P+KC++C K F        HM R H
Sbjct: 149 KCDVCERAFEHSGK---LHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHM-RTH 198



 Score = 33.9 bits (74), Expect = 0.002
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 724 HVNIHIGLLPYKCSLCPKAFASYSNHYKHMLRVHNV 617
           H   H G  PY C +C K+F      Y H+L++H V
Sbjct: 222 HTRTHTGEKPYTCDICGKSFG-----YNHVLKLHQV 252



 Score = 31.5 bits (68), Expect = 0.009
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 727 QHVNIHIGLLPYKCSLCPKAFASYSNHYKHMLRVHNVQPKSKSNLQKNIKDPSKK 563
           +H   H G  PY+C  C K+F+   N   H  R+H  +   K ++ +   + S K
Sbjct: 109 RHYRTHTGEKPYQCEYCSKSFSVKENLSVHR-RIHTKERPYKCDVCERAFEHSGK 162



 Score = 29.5 bits (63), Expect = 0.037
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 778 KCTYXQKKHSSKDYDXQQHVNIH--IGLLPYKCSLCPKAFASYSNHYKHMLRVH 623
           +C   QK    K+   Q H+  H   G  PY+C++C K FA  +   +H  R H
Sbjct: 63  QCLLCQKAFDQKNL-YQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRH-YRTH 114



 Score = 27.1 bits (57), Expect = 0.20
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -1

Query: 724 HVNIHIGLLPYKCSLCPKAFASYSNHYKHMLRVH 623
           H+  H G  PY C  C K F + S   K   R H
Sbjct: 194 HMRTHTGEKPYVCKACGKGF-TCSKQLKVHTRTH 226



 Score = 27.1 bits (57), Expect = 0.20
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = -1

Query: 724 HVNIHIGLLPYKCSLCPKAFASYSNHYKHMLRVHNVQPKSKSNLQKNIKDPSKKECHDKD 545
           H   H G   YKC+LC + F S      H ++ H+      S     I+   +   +   
Sbjct: 250 HQVAHYGEKVYKCTLCHETFGSKKTMELH-IKTHSDSSVVGSPRDSPIEPEIEISQNSVS 308

Query: 544 TNEEKQSVVDQKPLEQ 497
           T  +K++   ++P ++
Sbjct: 309 TGSDKENHKTEEPNDE 324



 Score = 25.4 bits (53), Expect = 0.60
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 694 YKCSLCPKAFASYSNHYKHMLRVH 623
           Y+C LC KAF    N Y+  LR H
Sbjct: 62  YQCLLCQKAF-DQKNLYQSHLRSH 84


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 757 KHSSKDYDXQQHVNIHIGLLPYKCSLCPKAFA 662
           K  S+ +  Q H+  H G  P+ C  C +AFA
Sbjct: 50  KAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFA 81



 Score = 29.1 bits (62), Expect = 0.049
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 784 SSKCTYXQKKHSSKDYDXQQHVNIHIGLLPYKCSLCPKAFA 662
           S  C Y +K + S     + H+  H   LP KC LC KAF+
Sbjct: 16  SFSCKYCEKVYVSLGA-LKMHIRTHT--LPCKCHLCGKAFS 53


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 718 NIHIGLLPYKCSLCPKA-FASYSNHYKHMLRVH--NVQPKSKSNLQKNIKDP 572
           +I I    Y+    PK   A  S H K  +R+   NVQP SK  +  N KDP
Sbjct: 418 DIQIFFAGYQAICKPKLKIADLSAHDKQAVRMSALNVQPTSKGRITLNSKDP 469


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 730 QQHVNIHIGLLPYKCSLCPKAFASYSNHYKHMLRVHNVQPKSKSNL 593
           + H+  H G  P+KC  C     SYS   K ML  H    KS SN+
Sbjct: 5   EYHLRNHFGSKPFKCEKC-----SYSCVNKSMLNSH---LKSHSNV 42


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -1

Query: 319 TFQTSMVPPEYGPDFVNKAIESSAFSGDYIDLDDHL-MPHIDPLLTIKHELLSRPAW 152
           T   SM PPE     V  A   SA++    D DDH  +P ++  L    E L  P W
Sbjct: 173 TVVASMDPPEPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEE-LGFDTEGLLPPVW 228


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  QYFGAHQTYCISICQCS*WKAC 93
           Q+   ++ +C ++C C  + AC
Sbjct: 734 QFLCRYEAHCFALCHCCDFDAC 755


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 604 KSNLQKNIKDPSKKECHDKDTNEEKQSVV 518
           K NL  +  DP  KEC +++    K +++
Sbjct: 191 KDNLIPDKNDPDSKECSNQEYEIMKDNLL 219



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = -1

Query: 613 PKSKSNLQKNIKD---PSKKECHDKD-TNEEKQSVVDQKPL--EQTIMDTDDSTVESIDP 452
           PKS+S  +  +KD   P K +   K+ +N+E + + D   L     +M  D+ + E +  
Sbjct: 180 PKSRSRKKGGLKDNLIPDKNDPDSKECSNQEYEIMKDNLLLYNHARLMSQDNHSKEYLVS 239

Query: 451 IALEKELQMFNETNNGD 401
           I        ++  NNG+
Sbjct: 240 IMFSH----YDRNNNGN 252


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 159 PPGSRPSLPHCTRLTMKTSQTPAGFPS*TLTYTNAVCLVSTKIL 28
           PP S  SLP     T  T+ T     + T T T A  L+  + L
Sbjct: 96  PPASSTSLPATITTTTTTTTTTTATAAATAT-TTATGLIKQETL 138


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
 Frame = -1

Query: 694 YKCSLCPKAFASYSNHYKHMLRVHNVQPKSK-SNLQKNIKDPSKKECHDKDTNEEKQSVV 518
           ++C  C K   S +   +H+  VH    K    N+ K +        + K     + S  
Sbjct: 3   FRCEPCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYHRQHSKN 62

Query: 517 DQKPLE-QTIMDTDDSTVESIDPIALEKELQ 428
           +Q+  E + + + +    E  D +  +++ Q
Sbjct: 63  EQQRKEMEQMREREREQREHSDRVTSQQQQQ 93


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +1

Query: 616 GHCAREACVC 645
           GHC +  C+C
Sbjct: 72  GHCEKVGCIC 81


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 691 KCSLCPKAFASYSNH 647
           KCSLC + F    N+
Sbjct: 273 KCSLCQRRFEEQGNY 287


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 159 PPGSRPSLPHCTRLTMKTSQTPAGF 85
           PP ++P +          SQ P GF
Sbjct: 738 PPTAQPRMERLAEAVRTASQIPQGF 762


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +1

Query: 616 GHCAREACVC 645
           GHC +  C+C
Sbjct: 72  GHCEKGVCIC 81


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +1

Query: 616 GHCAREACVC 645
           GHC +  C+C
Sbjct: 47  GHCEKGVCIC 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,351
Number of Sequences: 438
Number of extensions: 4973
Number of successful extensions: 29
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)