Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14b02
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532... 58 1e-08
03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,200... 56 3e-08
02_05_0174 - 26486955-26487728 45 6e-05
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 32 0.48
03_05_0979 - 29380899-29381063,29381157-29381210,29381451-293814... 30 1.9
12_02_0079 + 13310066-13310652,13310737-13310954,13311099-133113... 30 2.5
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 28 7.8
01_06_1738 + 39570411-39571931 28 7.8
>08_01_0606 -
5321751-5321819,5321950-5322192,5322279-5322377,
5322463-5322942,5323069-5323167,5323306-5323427,
5323517-5323635,5323734-5323801,5323889-5324074,
5324169-5324244,5324339-5324418,5324505-5324561,
5324980-5325122,5325208-5325352,5325652-5325813,
5325893-5326078,5326263-5326355,5326437-5326597,
5327005-5327109,5328263-5328278
Length = 902
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/60 (46%), Positives = 36/60 (60%)
Frame = -2
Query: 726 VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANAADYDKI 547
V+ YG GSSR+ AA P LG +A+I KSF RIH +NL G++PL F D D +
Sbjct: 777 VLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSL 836
>03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,
2008214-2008693,2008806-2008904,2009097-2009218,
2009296-2009414,2009492-2009559,2009832-2010017,
2010323-2010425,2010477-2010556,2010638-2010694,
2010771-2010913,2010988-2011132,2011501-2011662,
2011759-2011944,2012273-2012365,2012893-2013053,
2013440-2013547,2013664-2013928
Length = 995
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/60 (43%), Positives = 36/60 (60%)
Frame = -2
Query: 726 VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANAADYDKI 547
++ YG GSSR+ AA P G +A+I KSF RIH +NL G++PL F + D D +
Sbjct: 870 ILAGAEYGSGSSRDWAAKGPMLQGVKAVIAKSFERIHRSNLAGMGIIPLCFKSGEDADTL 929
>02_05_0174 - 26486955-26487728
Length = 257
Score = 45.2 bits (102), Expect = 6e-05
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = -2
Query: 726 VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQG-MLPLTFANAADYDK 550
++G N+G GSSREHA + G RA++ + +ARI N G + PL A+ + +
Sbjct: 141 IIGGANFGCGSSREHAPVALGAAGARAVVAEGYARIFFRNSVATGEVYPLELADTGAWKE 200
Query: 549 IKPDDKISL 523
K D +++
Sbjct: 201 CKTGDVVTV 209
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -2
Query: 633 SFARIHETNLKKQGMLPLTFANAADYDKIKPDDKISLLGLNSLAPGKPV 487
S +IH ++ + PLTFA D KP K+ GL PG PV
Sbjct: 271 SMGKIHFEKIRMKPGKPLTFAEIVTEDSSKPSKKVLAFGL----PGNPV 315
>03_05_0979 -
29380899-29381063,29381157-29381210,29381451-29381456,
29382167-29382280,29382379-29382422,29382540-29382615
Length = 152
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 617 WILANDLTMMARPPRCRGSSAACSRDE 697
W ++ + +RPPRC G A C R E
Sbjct: 49 WAAMSEALIGSRPPRCEGKCAPCGRCE 75
>12_02_0079 +
13310066-13310652,13310737-13310954,13311099-13311347,
13312012-13312076,13312367-13312465
Length = 405
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +2
Query: 689 RDEPSP*FSSPTTHQRTPGRLVRARRG----GHRPVLARHLV 802
R+ P P F P T +R L RG G RPVLAR+LV
Sbjct: 213 RELPQPIFPPPGTAKRVRNELYFKPRGDDGGGGRPVLARYLV 254
>10_08_0789 +
20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 650 RPPRCRGSSAACSRDEPSP*FSSPTTHQRTPG 745
RPPR R ++CSR +P + + +R PG
Sbjct: 69 RPPRTRSRRSSCSRAARTPPSGARSPRRRRPG 100
>01_06_1738 + 39570411-39571931
Length = 506
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 698 PSP*FSSPTTHQRTPGRLVR-ARRGGHRPVLA 790
PSP + P+ H TP L+R RR H P LA
Sbjct: 60 PSPLPALPSVHASTPAALLRILRRARHHPRLA 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,602,548
Number of Sequences: 37544
Number of extensions: 296811
Number of successful extensions: 835
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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