Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b01
         (802 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D31885-1|BAA06683.1|  226|Homo sapiens KIAA0069 protein.               62   2e-09
BC010281-1|AAH10281.1|  203|Homo sapiens ADP-ribosylation factor...    62   2e-09
AF232217-1|AAF63736.1|   71|Homo sapiens pregnancy-induced hyper...    31   6.4  

>D31885-1|BAA06683.1|  226|Homo sapiens KIAA0069 protein.
          Length = 226

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 27/110 (24%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
 Frame = -3

Query: 737 LCIFSF---VICNQLYGSSSWTGQHEKTFEEICRSIVISYNKLVIYIHSFYSLRDTSPFM 567
           LC+  +   ++  +++GS+ WT + ++ F EIC ++V +  + V +    ++L++  P M
Sbjct: 100 LCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAVGWWKRLFTLKEEKPKM 159

Query: 566 YYTISISTLCTVAWISSSINNIFXXXXXXXXXXLWPGIQRSGIFNSFFSV 417
           Y+   I +L  VAW+   ++N+           L PG+ + GI   +  +
Sbjct: 160 YFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGIILKYIGM 209



 Score = 36.7 bits (81), Expect = 0.097
 Identities = 12/31 (38%), Positives = 24/31 (77%)
 Frame = -2

Query: 792 VILWEQQWHPCAIVGSMTIMYLLICYMQPAL 700
           V+ WE+ W P AI+G +++++L+I Y+ P++
Sbjct: 59  VLRWERAWFPPAIMGVVSLVFLIIYYLDPSV 89


>BC010281-1|AAH10281.1|  203|Homo sapiens ADP-ribosylation
           factor-like 6 interacting protein 1 protein.
          Length = 203

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 27/110 (24%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
 Frame = -3

Query: 737 LCIFSF---VICNQLYGSSSWTGQHEKTFEEICRSIVISYNKLVIYIHSFYSLRDTSPFM 567
           LC+  +   ++  +++GS+ WT + ++ F EIC ++V +  + V +    ++L++  P M
Sbjct: 77  LCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAVGWWKRLFTLKEEKPKM 136

Query: 566 YYTISISTLCTVAWISSSINNIFXXXXXXXXXXLWPGIQRSGIFNSFFSV 417
           Y+   I +L  VAW+   ++N+           L PG+ + GI   +  +
Sbjct: 137 YFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGIILKYIGM 186



 Score = 36.7 bits (81), Expect = 0.097
 Identities = 12/31 (38%), Positives = 24/31 (77%)
 Frame = -2

Query: 792 VILWEQQWHPCAIVGSMTIMYLLICYMQPAL 700
           V+ WE+ W P AI+G +++++L+I Y+ P++
Sbjct: 36  VLRWERAWFPPAIMGVVSLVFLIIYYLDPSV 66


>AF232217-1|AAF63736.1|   71|Homo sapiens pregnancy-induced
           hypertension syndrome-related protein protein.
          Length = 71

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -2

Query: 186 FIFI*ISFNCKVCV*IGFHFMYTYMFVI*LQIMTNQLNYILCDLFKFVMCNFTVDK 19
           FI++   F   +C+ +  HF Y     +  +I + +LN ILC L   + C F V K
Sbjct: 9   FIYVEKMFELVICLLLKMHFKY--QIYLKDKIASVKLNIILCALGYALKCQFIVPK 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,510,177
Number of Sequences: 237096
Number of extensions: 2341091
Number of successful extensions: 7207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7207
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)