Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14b01
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016420-8|AAB65305.1|  364|Caenorhabditis elegans Serpentine re...    31   0.73 
Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z79639-2|CAB01915.1|  367|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL117202-12|CAB55074.1|  274|Caenorhabditis elegans Hypothetical...    29   3.9  

>AF016420-8|AAB65305.1|  364|Caenorhabditis elegans Serpentine
           receptor, class r protein5 protein.
          Length = 364

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 698 GSSSWTGQHEKTFEEICRSIVISYNKLVIYIHSFYSLRDTS 576
           G+  W G H+   +    SI++ YN   +   +F+SLR  S
Sbjct: 255 GTYMWFGFHDFPMDSSISSIILKYNIFAVLFITFFSLRPAS 295


>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 626 NKLVIYIHSFYSLRDTSPFMYYTISISTL 540
           N+ +I IHSFY L  T  ++ Y+++++ L
Sbjct: 118 NQAMISIHSFYKLNPTGRYILYSLNLTEL 146


>Z79639-2|CAB01915.1|  367|Caenorhabditis elegans Hypothetical
           protein F54E4.2 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -2

Query: 786 LWEQQWH---PCAIVGSMTIMYLLICYMQ 709
           LW   WH   PC IV  ++ MYLL+   Q
Sbjct: 134 LWRSPWHMVIPCFIVAIISNMYLLVAVKQ 162


>AL117202-12|CAB55074.1|  274|Caenorhabditis elegans Hypothetical
           protein Y47D3A.15 protein.
          Length = 274

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 739 NYVSSHLLYATSFMDLVLGQDNTRRHLKKFVEAL 638
           N+V  + +YA S  D V+   +T+R+ KKFV  L
Sbjct: 236 NHVMLNHMYALSIKDSVMVLSSTQRYRKKFVTTL 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,722,036
Number of Sequences: 27780
Number of extensions: 405286
Number of successful extensions: 913
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)