Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a24
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    65   1e-11
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    43   4e-05
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    31   0.12 
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    27   2.6  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   2.6  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   2.6  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   7.9  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   7.9  

>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 29/57 (50%), Positives = 39/57 (68%)
 Frame = -2

Query: 357 VGHRGLGASFKTKEGNAIRENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHDFYV 187
           +GHRGLG +   +    + ENT+ S  KAA  GA  +E DVQ++KDM+PV+YHDF V
Sbjct: 750 IGHRGLGKNQPDRLSLQLGENTLQSFIKAADLGASYVELDVQMTKDMVPVVYHDFIV 806


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 21/56 (37%), Positives = 33/56 (58%)
 Frame = -2

Query: 363 LEVGHRGLGASFKTKEGNAIRENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHD 196
           L + HRG   ++  +      ENTI + ++A  +GAD +E DV+L+KD +  I HD
Sbjct: 33  LVIAHRGKCLTYVYRYKAKYPENTILAFQQAVKAGADCVETDVRLTKDEVVCILHD 88


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = +2

Query: 305 IAFPSFVLKLAPKPLCPTSNPVQLESQYLAYETCKLQ-----SFSCIGQTVRYPKFTVPR 469
           I+FPS      P  +CP+ N V+ +  Y+ YE          S  C+  T R     + R
Sbjct: 362 ISFPSLCRTCPPNAICPSPNYVECKPGYVLYEPWYSSLGFWPSKYCVSDTSREESVNIFR 421

Query: 470 GRCFTLHVTGNSKL 511
             C ++  + N+ L
Sbjct: 422 EECLSVLRSWNAIL 435


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 293 VFSRIAFPSFVLKLAPKPLCPTSNPVQLESQYLAY 397
           VF RIAF      +  KPL   ++ +++  QYL Y
Sbjct: 230 VFKRIAFDGHTSLVLCKPLTGRTHQLRVHLQYLGY 264


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 250 QICTTCSCFFKRSYCILTNSISFFCFKTCTQASV 351
           QI ++C   F RS+  +T+  S F   TC +A V
Sbjct: 418 QIKSSCFSLFSRSFSNMTSLPSKFTVDTCAKACV 451


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 362 NPVQLESQYLAYETCKLQSFSCIGQTVRYPKFTVPRGRCFTLHVTGNSKLPSEGLNMFGN 541
           NP+  E QY+   T  ++ ++  G +     F +      T   TG S  P    NM+G+
Sbjct: 196 NPLIFEDQYIELTTNMVEDYNVYGLSGSQQSFRLGNNLTKTFWATGYSDSPE--ANMYGS 253


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 630 KQLAYXIDFYSYSSRAASEDPPCHVGYTYVLPNMFKPSE 514
           K+LA   D    SS+  SE  P       +L NMF P+E
Sbjct: 481 KKLARSEDISDNSSKLVSEPEPPIRSRCALLENMFNPAE 519


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -1

Query: 502 IASNMQCKTSTSWNCEFWIPNSLSYTGKAL*LAGFV 395
           IAS     +S SW  EFWI   L  +G +L LAG V
Sbjct: 182 IASGFIAGSSISWRWEFWI--LLMLSGVSL-LAGVV 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,387
Number of Sequences: 5004
Number of extensions: 56531
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)