Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a24
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0403 + 18636953-18637004,18637088-18637299,18638852-186389... 50 2e-06
08_02_1397 + 26744154-26744450,26745079-26745138,26745251-267453... 46 4e-05
01_06_0807 + 32125987-32126029,32126030-32126208,32126760-321269... 36 0.024
03_05_0253 + 22416981-22416993,22417458-22417639,22417965-224181... 35 0.072
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760... 33 0.17
03_02_0454 + 8626832-8627134,8627255-8627606,8627705-8627748,862... 33 0.29
08_02_1628 + 28363476-28363517,28363624-28363791,28363863-283639... 30 1.5
04_03_0766 + 19384544-19384610,19384705-19384922,19385303-193853... 30 1.5
04_04_0204 + 23582239-23582338,23582866-23583213,23583357-235834... 29 2.7
02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084... 29 3.6
12_02_0229 - 15940144-15940451,15940879-15941380,15941594-159417... 28 6.2
03_02_0799 - 11330254-11330319,11330359-11330505 28 6.2
10_05_0109 - 9248031-9248276,9250196-9250471 28 8.3
07_01_0603 + 4489864-4491240 28 8.3
>02_03_0403 +
18636953-18637004,18637088-18637299,18638852-18638911,
18639078-18639158,18639273-18639473,18639575-18639670,
18639780-18639976,18640067-18640295
Length = 375
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Frame = -2
Query: 357 VGHRGLGASFKT---KEGNAIRENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHDFYV 187
+GHRG G + + ++EN++ S +AA D +EFDVQ++KD PVI+HD +
Sbjct: 44 IGHRGKGMNALASPDRRMQEVKENSLRSFNEAARFPVDYVEFDVQVTKDGCPVIFHDNF- 102
Query: 186 CISMKRKKEIEFTEMLELPVKDLTL 112
I K +I + +L ++D L
Sbjct: 103 -IFTKEDGKILDKRVTDLQLEDFLL 126
>08_02_1397 +
26744154-26744450,26745079-26745138,26745251-26745331,
26745437-26745637,26745746-26745841,26746479-26746675,
26746774-26747005
Length = 387
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Frame = -2
Query: 354 GHRGLGAS-FKTKEGNAI-----RENTIASLKKAAASGA-DLLEFDVQLSKDMIPVIYHD 196
GHRG+G + G I RENT+ S +AAA A +EFDVQ++KD P+I+HD
Sbjct: 52 GHRGMGMNAVGAPPGARIEAVRERENTLLSFGRAAAHAAVAFVEFDVQVTKDGCPIIFHD 111
Query: 195 FYV 187
++
Sbjct: 112 DFI 114
>01_06_0807 +
32125987-32126029,32126030-32126208,32126760-32126943,
32127714-32127788,32128079-32128188,32128747-32128965,
32129124-32129279,32129759-32129911,32130223-32130349,
32131598-32131728,32131858-32132139
Length = 552
Score = 36.3 bits (80), Expect = 0.024
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Frame = -2
Query: 306 IRENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHDFYV-----------CISMKRKKE 160
I E T A+ +A GAD +E D+ SKD + +HD + + +R E
Sbjct: 65 IPEETAAAYLRAIEEGADFIETDILASKDGALICFHDVTLDATTDVASRKEFSNRRRTYE 124
Query: 159 IEFTEMLELPVKDLTLEHLQKLKVH 85
+E+ V D TLE L+ LKV+
Sbjct: 125 VEWFNATGWFVVDFTLEELKTLKVN 149
>03_05_0253 +
22416981-22416993,22417458-22417639,22417965-22418148,
22418241-22418315,22418481-22418590,22419411-22419629,
22419713-22419868,22419996-22420232
Length = 391
Score = 34.7 bits (76), Expect = 0.072
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Frame = -2
Query: 306 IRENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHDFYV-----------CISMKRKKE 160
I E T A+ +A GAD +E D+ +KD + +HD + + KR E
Sbjct: 56 IPEETTAAYLRAIEEGADFIESDILATKDGHLICFHDVILDATTDIANRTEFANRKRTYE 115
Query: 159 IEFTEMLELPVKDLTLEHLQKLKV 88
+E + V D TLE L+ L+V
Sbjct: 116 VERQNVTGWFVVDFTLEELKSLRV 139
>07_03_1177 -
24574682-24574852,24575047-24575618,24575711-24576068,
24576108-24576152
Length = 381
Score = 33.5 bits (73), Expect = 0.17
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Frame = -2
Query: 300 ENTIASLKKAAASGADLLEFDVQLSKDMIPVIYHDFYV-----------CISMKRKKEIE 154
E T A+ +A GAD +E DV +KD V +HD + S +R E++
Sbjct: 66 EETAAAYMRAIDEGADFIEADVTATKDGHLVCFHDTTLDATTDVADHPEFASRRRTLEVQ 125
Query: 153 FTEMLELPVKDLTLEHLQKLK 91
+T + + D TL L+ L+
Sbjct: 126 WTNVTGFFITDFTLAELKTLR 146
>03_02_0454 +
8626832-8627134,8627255-8627606,8627705-8627748,
8629014-8629035,8629136-8629350,8629468-8629592,
8629681-8629756
Length = 378
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 447 YLTVCPIQEKLCNLQVSYAKYWD-SSWTGLEVGHRGLGASFK 325
+L V P+ CN+QV KY D SS G+ + +GLG FK
Sbjct: 87 HLAVTPLDLVKCNMQVDPGKYRDISSGFGVLLQEQGLGGFFK 128
>08_02_1628 +
28363476-28363517,28363624-28363791,28363863-28363937,
28364018-28364070,28364559-28364709,28365079-28365261,
28366110-28366236,28366731-28366831,28367156-28367294,
28367359-28367420,28367702-28367754,28368266-28368290
Length = 392
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 273 AAASGADLLEFDVQLSKDMIPVIYHDFYVCISMKRKKEIE 154
AA GAD++ FDV+L + + V F+V + EIE
Sbjct: 139 AALDGADIVYFDVRLHETALLVAEEHFFVLVKGTPSSEIE 178
>04_03_0766 +
19384544-19384610,19384705-19384922,19385303-19385344,
19385696-19385755,19385926-19386006,19386126-19386275,
19386526-19386621,19387091-19387287,19387390-19387669
Length = 396
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 18/75 (24%)
Frame = -2
Query: 357 VGHRGLGASFKTKEGNAIRE---NTIASLKKAA-ASGADLLEFDVQ-------------- 232
+GHRG G + +RE N++ S AA +G +EFDVQ
Sbjct: 50 IGHRGKGMNALGSADPRLREVKENSLRSFHAAARVAGVSYVEFDVQTGASTIVQLNLNQM 109
Query: 231 LSKDMIPVIYHDFYV 187
++KD PVI+HD ++
Sbjct: 110 VTKDGYPVIFHDDFI 124
>04_04_0204 +
23582239-23582338,23582866-23583213,23583357-23583472,
23583565-23584003,23584165-23584203,23584282-23584569,
23584667-23584806,23585080-23585563,23585828-23586090
Length = 738
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 294 TIASLKKAAASGADLLEFDVQLSKDMIPV 208
T + +KA GAD+++ VQL+KD IP+
Sbjct: 366 TDLAYQKAVDDGADVIDCPVQLTKDGIPI 394
>02_04_0415 +
22706964-22707072,22707784-22708077,22708304-22708416,
22708504-22709002,22709106-22709144,22709228-22709515,
22709766-22709905,22710468-22710960,22711082-22711356
Length = 749
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -2
Query: 294 TIASLKKAAASGADLLEFDVQLSKDMIPV 208
T + +KA GAD+++ VQ++KD IP+
Sbjct: 370 TDLAYQKAVTDGADVIDCPVQVTKDGIPI 398
>12_02_0229 -
15940144-15940451,15940879-15941380,15941594-15941727,
15941954-15942238,15942965-15943463,15944064-15944350,
15944702-15944801
Length = 704
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -2
Query: 294 TIASLKKAAASGADLLEFDVQLSKDMIPV 208
T + +KA GAD+++ ++++KD IP+
Sbjct: 314 TDLAYEKAVGDGADVIDCSIEMTKDGIPI 342
>03_02_0799 - 11330254-11330319,11330359-11330505
Length = 70
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 44 DLHCDEL*TARPHECTFSFCRCSKVKSFTG 133
+++ D L H+C F +CR K KS +G
Sbjct: 32 EVNSDILFVVPDHDCDFVYCRACKEKSISG 61
>10_05_0109 - 9248031-9248276,9250196-9250471
Length = 173
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 404 RFRMPSIGTQVGQG*KWDTEAWVQVL 327
R+R+P+ GT VG+G W W +L
Sbjct: 114 RWRLPTNGTDVGRGGAWGGCVWTGLL 139
>07_01_0603 + 4489864-4491240
Length = 458
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -2
Query: 540 LPNMFKPSEGNLELPVTCNVKHRPLGTVNFGYLTVCPIQEKLCNLQVSYAKYWDSSWTGL 361
L ++KP E N + P G+ + + +C LC ++ A+ D+SW +
Sbjct: 204 LQRVYKPDEKNYPYITMVALSCSPAGSDDDDCVALCVY---LCGRCLAIARPGDASWARV 260
Query: 360 EVG 352
EVG
Sbjct: 261 EVG 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,373,276
Number of Sequences: 37544
Number of extensions: 343119
Number of successful extensions: 816
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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