Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a24
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   8.6  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 468 LGTVNFGYLTVCPIQEKLCNLQVSYAKYWD 379
           LG V FG + V P+QE   N+ +    +W+
Sbjct: 52  LGPVGFGGVQVSPVQE---NIVIDKRPWWE 78


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 338 PKPLCPTSNPVQLESQYLAYETCKLQSFSCIGQTVR 445
           P+ +C     V    +Y+A E C    F+C    +R
Sbjct: 583 PESVCSLPCEVGQAKKYVAGEQCCWHCFNCTQYQIR 618


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 546 KCIQHDKEDLQMLHDYYMNKSLL 614
           +C+ HD E+  +    +MN++ L
Sbjct: 149 RCLHHDIENAHIRRTLHMNRTSL 171


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 262 TCSCFFKRSYCILTNSISFF 321
           TC+     +Y ++++SISF+
Sbjct: 183 TCALDLTPTYAVVSSSISFY 202


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 419 FSCIGQTVRYPKFTVPRGRCF 481
           F CIG    +P+F  P    F
Sbjct: 148 FRCIGPPTPFPRFIPPNAYRF 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,672
Number of Sequences: 438
Number of extensions: 3916
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)