Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a23
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   2.0  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    26   2.7  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   3.6  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   6.2  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       25   6.2  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   6.2  
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...    24   8.2  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    24   8.2  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    24   8.2  

>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = +2

Query: 47  SVIKFXLRIYLDLSIRQ--TYIL----EI*SRIFWLLDYQLTGVILRSAITSWATIS 199
           +V +   + Y ++  R    YI+    ++    F +L YQ T ++  S + SWAT++
Sbjct: 191 TVFRMGFKKYFEMIFRHGWKYIIFAFFDVEGNYFVVLAYQYTNMLSASLLDSWATVA 247


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 318 GEVTLKHFIPDTLISNSTVTHNAYCPEH 401
           G ++L     +T   +ST+  N YCPEH
Sbjct: 109 GFLSLVFHTKETNSKSSTLHSNPYCPEH 136


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 385 ALCVTVLLLINVSGIKCFN-VTSPSIEGVIFNGT--FNATVL 269
           A+C+  +L++ +  + CF  +  P + G   NGT  F +TV+
Sbjct: 36  AICILGILILAIVKLFCFKAIIFPIVGGSFNNGTNVFQSTVI 77


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 46  FRNKVSVKNLSRSFYSPNVHSGNIKSNL 129
           F N    K LSR   S ++ S N++SN+
Sbjct: 708 FNNHTGNKILSRQTTSSSIDSNNVQSNI 735


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 218 NHGDIHRRWLPNWLW 174
           N  +I ++WLPN  W
Sbjct: 142 NFSEIQKKWLPNMSW 156


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 354 LISNSTVTHNAYCPEHF 404
           L+ + T+TH  Y PE F
Sbjct: 251 LVRDGTITHEVYTPESF 267


>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +1

Query: 43  RFRNKVSVKNLSRSFYSPNVHSGNIKSNLLVTRLSADRCYLALCHNQ 183
           R+R  + +    R    P  H G    + +V R+   +CYL   +++
Sbjct: 114 RYRIALRIAKDERFERLPCTHKGTYADDCIVQRVMQHKCYLVATNDK 160


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 195 SPMNISVICGTPESPFKSTVFSLRVKTVALKVPLNITPSI 314
           S +   VI   PES F   +  L    + L  PL + P+I
Sbjct: 515 SKVKTVVILNMPESTFTVIIQFLYAIAILLSTPLQLFPAI 554


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 260 RKYS*LERRFWSPANHGDIHRRWLPN-WL 177
           R +  LE  F S  N+   HR WL N W+
Sbjct: 554 RVWDILESSFESSKNYKSDHREWLSNPWV 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,158
Number of Sequences: 5004
Number of extensions: 35212
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)