Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a23
(416 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z81586-3|CAB04691.1| 203|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical pr... 27 4.1
AL021175-2|CAA15966.1| 322|Caenorhabditis elegans Hypothetical ... 27 4.1
U97005-11|AAB52288.1| 891|Caenorhabditis elegans Hypothetical p... 27 5.5
AF067607-7|AAF98613.1| 433|Caenorhabditis elegans Serpentine re... 27 7.2
AF039034-1|AAB94161.2| 423|Caenorhabditis elegans Hypothetical ... 27 7.2
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca... 27 7.2
U52001-2|AAK68379.1| 104|Caenorhabditis elegans Feminization of... 26 9.5
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 26 9.5
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 26 9.5
AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical ... 26 9.5
AF016422-7|AAW88391.1| 296|Caenorhabditis elegans Serpentine re... 26 9.5
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 190 CPTGYGRAQDNTCQLIIE*PK-DSTLYFQNVRLANR 86
CPTG+ +A D +CQ I E + +ST N + N+
Sbjct: 1478 CPTGFRKADDGSCQDIDECTEHNSTCCGANAKCVNK 1513
>Z81586-3|CAB04691.1| 203|Caenorhabditis elegans Hypothetical
protein T05F1.4 protein.
Length = 203
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 350 IRNKMFQRHFTINRRXDIQWHFQCHSFNS*RKYS*LERRFWSPANHGDI 204
IR+ RH + +RR + H FN+ R+ + R SP+NH +
Sbjct: 33 IRDNQSDRHLSPDRRSNHSEDRHEHRFNNYRQQNRPNSRTPSPSNHNQV 81
>Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 71 IYLDLSIRQTYILE-I*SRIFWLLDYQLTGVILRSAITSWATISDEYLRDLRD 226
+++ R Y +E + R +W +D L++ WATI E + L+D
Sbjct: 667 VFMTAQQRSLYNIEGLTGRAWWAMDQTPYSKFLKTVERQWATIRQEGMEVLKD 719
>Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 71 IYLDLSIRQTYILE-I*SRIFWLLDYQLTGVILRSAITSWATISDEYLRDLRD 226
+++ R Y +E + R +W +D L++ WATI E + L+D
Sbjct: 667 VFMTAQQRSLYNIEGLTGRAWWAMDQTPYSKFLKTVERQWATIRQEGMEVLKD 719
>AL021175-2|CAA15966.1| 322|Caenorhabditis elegans Hypothetical
protein Y6E2A.2 protein.
Length = 322
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 72 FI*IFLFA---KRTFWKYKVESFGYSIIS*QVLSCAL-P*PVGQPSPMN 206
FI +FL + K+TF YK F +S++ CA PV SP+N
Sbjct: 26 FILLFLISEMPKKTFGSYKYLMFSFSVLGIYYSCCAFWSNPVSFQSPVN 74
>U97005-11|AAB52288.1| 891|Caenorhabditis elegans Hypothetical
protein F19F10.10 protein.
Length = 891
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -2
Query: 298 FNGTFNATVLTRKENTVDLKGDSGVPQITEIFIGDGCPTGYGRAQDNTCQLIIE*PKD 125
F+ TF+ ++E T + D+GV + E + G P G + + C L E P+D
Sbjct: 577 FSATFDCVQEVKQEATEEEPSDAGVKHLMESLV-SGIPLGI--QEPSECVLEEEKPRD 631
>AF067607-7|AAF98613.1| 433|Caenorhabditis elegans Serpentine
receptor, class t protein59 protein.
Length = 433
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 43 RFRNKVSVKNLSRSFYSPNVHSGNIKSNLLVTRLSADRCYLALC 174
+F KNL ++F NVH NIK L+ +++ YL LC
Sbjct: 151 KFFKNFGEKNLEKNF-GKNVHFRNIKIFLIQNKITFQTMYL-LC 192
>AF039034-1|AAB94161.2| 423|Caenorhabditis elegans Hypothetical
protein H22D07.1 protein.
Length = 423
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 65 LRIYLDLSIRQTYILEI*SRIFWLLDYQLTG 157
LRI L+L+ T L + +I WL+ YQ G
Sbjct: 73 LRITLNLADLMTLFLYVPKQIIWLITYQWYG 103
>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
protein 4 protein.
Length = 2325
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 228 PESPFKSTVFSLRVKTVALKVPLNITPSIDGEVTLKHFIPDTLISNSTV 374
PE P + ++ S+ A V L+ TP DG ++ ++ + +++S+V
Sbjct: 1054 PELPGRPSMLSIG-DISATTVQLHFTPGFDGHTAIRQWVVEGKMADSSV 1101
>U52001-2|AAK68379.1| 104|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform b protein.
Length = 104
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -1
Query: 374 YRTVTY*RIRNKMFQRH--FTINRRXDIQWHFQCHSFNS 264
+RTV Y QR FTIN R D QW C FNS
Sbjct: 8 FRTVIYNAAAVGNLQRIKVFTINSRNDRQWIIDC--FNS 44
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -1
Query: 374 YRTVTY*RIRNKMFQRH--FTINRRXDIQWHFQCHSFNS 264
+RTV Y QR FTIN R D QW C FNS
Sbjct: 8 FRTVIYNAAAVGNLQRIKVFTINSRNDRQWIIDC--FNS 44
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -1
Query: 374 YRTVTY*RIRNKMFQRH--FTINRRXDIQWHFQCHSFNS 264
+RTV Y QR FTIN R D QW C FNS
Sbjct: 8 FRTVIYNAAAVGNLQRIKVFTINSRNDRQWIIDC--FNS 44
>AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical
protein F13H6.1 protein.
Length = 690
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 213 VICGTPESPFKSTVFSLRVKTVALKVPLNITPSIDGEVTLKHF 341
V+CG + F + FS ++ +TPS D EVT ++F
Sbjct: 106 VVCGECHTSFSLSCFSNFIEHKVSNCGGKLTPSDDCEVTPRNF 148
>AF016422-7|AAW88391.1| 296|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 59 protein.
Length = 296
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +1
Query: 55 KVSVKNLSRSFYSPNVHSGNIKSNLLVTRLSADRCYLALC 174
+++VKNLS PN G+I+S LV ++ADR LA C
Sbjct: 74 ELAVKNLSFFIAWPNFVLGSIRSR-LVLLITADR-VLASC 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,457,580
Number of Sequences: 27780
Number of extensions: 198005
Number of successful extensions: 516
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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