Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a23
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   2.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   3.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   4.2  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   5.6  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   5.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.4  
AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly pro...    21   7.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   9.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 91   SPNVHSGNIKSNLLVTRLSADRCYLALCHNQLGNHLR*IS 210
            SP+VH G I   + V +      +  + +    N+LR IS
Sbjct: 904  SPDVHQGQIHLTVAVVQYKTQDGFGPIHYGVCSNYLREIS 943


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 195 SPMNISVICGTPESP 239
           SPM ++ + GTP +P
Sbjct: 37  SPMELNALVGTPAAP 51


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 323 FTINRRXDIQWHFQCHSFNS*RKYS 249
           F +    ++ W+ QC +FN+   Y+
Sbjct: 175 FHLETHPNVTWYSQCVTFNAFPTYT 199


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 242 ERRFWSPANHGDIHRRWLPN 183
           ERR +SP    D+ RR + N
Sbjct: 671 ERRIYSPITFQDVARRSVAN 690


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +2

Query: 125 IFWLLDYQLTGVILRSAITSWAT 193
           IFW L  Q      R  + +W T
Sbjct: 334 IFWFLTRQNPAAFFRGMMQAWMT 356


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 141 SSNQKIRLYISRMYV 97
           S+N+KI  YI RM++
Sbjct: 68  STNEKITRYIIRMFL 82


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 141 SSNQKIRLYISRMYV 97
           S+N+KI  YI RM++
Sbjct: 51  STNEKITRYIIRMFL 65


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 367 LLLINVSGIKCFNVTSPSI 311
           LLL+   GI C +VTS ++
Sbjct: 5   LLLVVCLGIACQDVTSAAV 23


>AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly
           protein MRJP3 protein.
          Length = 31

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 367 LLLINVSGIKCFNVTSPSI 311
           LLL+   GI C +VTS ++
Sbjct: 5   LLLVVCLGIACQDVTSAAV 23


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 331  NVTSPSIEGVIFNGTFNATVLTRKE 257
            N+     + VIF+ +F++ V+TR +
Sbjct: 1124 NLEGEQKDPVIFSTSFDSKVMTRPD 1148


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 373 TVLLLINVSGIKCFNVTSPSI 311
           T LLL+   GI C  +TS ++
Sbjct: 3   TWLLLVVCLGIACQGITSVTV 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,146
Number of Sequences: 438
Number of extensions: 2773
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)