Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a19
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   3.8  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.0  
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc...    25   5.0  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    24   8.7  
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    24   8.7  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 383  VNSHGPPQERDNEDIAMGRKVK-KMGAKWCNMAKACNHDRVPI 258
            VNS GP  E+DN+ +     VK ++  K+C +      +R  I
Sbjct: 1170 VNSLGPVSEQDNDFVQDETDVKLELNPKFCTIENPVAQERTLI 1212


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 420 NSSISSLLHDINCQFTRTSTREG 352
           N+ I+   H ++C FTRT  + G
Sbjct: 96  NACINCRKHHLDCNFTRTPLKRG 118


>SPCC16A11.07 |coq10||ubiquinone binding protein
           Coq10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 164

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 302 WCNMAKACNHDRVPICGISHAGDV-VGFRDLCDMFD 198
           +C  +K   +D  P  G     D+ VGF+ LC+ FD
Sbjct: 42  FCQKSKVTEYD--PKTGYPTKADLTVGFKGLCETFD 75


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 318 FYLPPHRYVLIIPLLWRS 371
           FYLP HR ++++ L+ ++
Sbjct: 357 FYLPSHRLLMLVALMMKN 374


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 401 CFMILTVNSHGPPQERDNEDIAMGRKVKKMGAKWCNMAKACNHDRV 264
           C + +T+   G P   D E + +GR   +      NM+K  N  ++
Sbjct: 365 CHLPITLEELGIPNVTDEELLMVGRATLRPDESIHNMSKKFNPSQI 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,816
Number of Sequences: 5004
Number of extensions: 31280
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)