Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a19
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378...    29   2.1  
06_01_0120 - 926226-926289,926821-926887,927122-927170,927257-92...    27   8.6  

>03_04_0013 +
           16436438-16436536,16437257-16437742,16437791-16437826,
           16437835-16438323,16438951-16439622
          Length = 593

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 317 KMGAKWCNMAKACNHDRVPICGISHAGDV 231
           +MG  W    K C+ D  P C +   GDV
Sbjct: 541 EMGDSWSYRCKECDFDLHPKCALEEKGDV 569


>06_01_0120 -
           926226-926289,926821-926887,927122-927170,927257-927313,
           927826-927897,928145-928236,928331-928403,928870-928944,
           929207-929314,929372-929422,929834-929959,930324-930362,
           930452-930535,931018-931109,931217-931300,931410-931524
          Length = 415

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +1

Query: 286 FAMLHHLAP-IFFTFRPIAMSSLSLSCGGPCELTVNIMKQRRYRTIV 423
           F +L H+ P IF    P  M S    CGG  +      K  + R +V
Sbjct: 224 FRLLLHVTPAIFMQTGPFRMQSTCTQCGGSGKTVKEFCKSCKGRKVV 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,181,898
Number of Sequences: 37544
Number of extensions: 213418
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)