Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a18
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.96 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    28   1.3  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.3  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    27   2.9  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    27   2.9  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    27   3.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   5.1  
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    26   6.8  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   6.8  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    26   6.8  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   6.8  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   6.8  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   9.0  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 582 STSCLMSTTAPRLGSSCSVVGPTTSSPLGHSPAFLVSTC*VVPAAP 719
           STSC  ST+ P  G+S + V PT   P   S     + C    + P
Sbjct: 390 STSCTTSTSIPPTGNSTTPVTPTV-PPTSSSTPLTTTNCTTSTSVP 434



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 582 STSCLMSTTAPRLGSSCSVVGPT 650
           STSC  ST+ P  G+S + V PT
Sbjct: 282 STSCTTSTSIPPTGNSTTPVTPT 304



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 582 STSCLMSTTAPRLGSSCSVVGPT 650
           STSC  ST+ P  G+S + V PT
Sbjct: 336 STSCTTSTSIPPTGNSTTPVTPT 358


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/73 (26%), Positives = 28/73 (38%)
 Frame = +1

Query: 154 APRLRPVQGIAPTRIPTKDLATPLNQIH*AVTITTRSLSQSSGWCAPETRANYLPPTSET 333
           AP  +PV+   P  +P +  +        A  +   SLSQ+SG          LP     
Sbjct: 51  APAAQPVESSVPLPLPKRKSSVEKRAGSVASAVAAMSLSQNSGEKRTPEEPRKLPGVPAP 110

Query: 334 GSSARASSCRTPT 372
              + ASS  + T
Sbjct: 111 QKQSEASSVNSST 123


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 550  PYTHAADLLEIKEENNDKGDIFYASCDEDNDCVTIELPCE 431
            P+ H+  L +I+ E+  +GD+FY +  +  D  +   P +
Sbjct: 1024 PHRHSVSLGQIRGESEVEGDVFYDAPSDKEDLGSSNAPLD 1063


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 442 LPCEEEIPVQTEIDSVKNDSSAITLECD---MKMLSPMTLSPKS 320
           +P   E+PV+T +DSV   ++A++   +   M   SP+   P+S
Sbjct: 147 IPNTPELPVKTTLDSVNEIAAALSTHAESSPMDATSPVDSMPES 190


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 601 DIKHDVDRILAQHSYAHPYTHAADLLEIKEENND 500
           D++ D   I+      HP+ HA  +  I  E++D
Sbjct: 307 DVQSDTSEIIENEPGMHPHVHAERMSRIASESSD 340


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 267 KSELRLVCAGDKSKLSSTDFGDRVIGESIFMSHSNVIAE 383
           + E  L  + D  K ++ DFGD    E     H N++A+
Sbjct: 239 EDEEGLSLSEDGKKFANIDFGDYSSSEEFLKEHLNILAD 277


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -2

Query: 735 SKKLMQVLQERLNMSKPGKLESALKEMKWWGPQQNNWN 622
           ++++++ LQ+  +++ P  LE   K+ + W   QN+WN
Sbjct: 721 AQQIIENLQKNPSVTIPIVLERLKKKDREWRSLQNHWN 758


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 103 LKTYN*SV-FGGNFFQNYAPRLRPVQGIAPTRIPTKDLATPLNQ 231
           LKT   S+ F GNF     P+LR V+G    +  + D   P  Q
Sbjct: 292 LKTVAGSIDFTGNFSSVELPKLRDVKGGLNIQTTSSDFTCPFRQ 335


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 460 HYLRHSLRR--ICRLYRCSPL*FREGLLRVCRDEHKSVVPVSC 582
           H   HS  R  +C    CS   +R+  L++ +  H +V P SC
Sbjct: 43  HLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSC 85


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +2

Query: 431 FAGKFYRDAIIIFVTACVEYVAFIVVLLFDFEKVCCVCVGMSI-RVLCQYPVDVMLDVYY 607
           F+  F +   +IFV+   +      +++   EKV  V +G++I  +LC   V V++  Y 
Sbjct: 175 FSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTM-VAVIVGRYI 233

Query: 608 STSTG-FQLFCCGPHHFISFRALSSFPGF 691
           S     +++   G   F+ F  L  F GF
Sbjct: 234 SNKIEMYKVLFFGGIVFMIFGILYIFQGF 262


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 667 PKGDEVVGPTTEQLEPSRGAVVDIKHDVDR 578
           PKG +V      Q   S GA++  + D+D+
Sbjct: 384 PKGGDVAPDDLNQTNFSNGAIIRYREDIDK 413


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 726 LMQVLQERLNMSKPGKLESALKEMKWWGPQQNN 628
           ++Q   ER NMS P +  S  ++  W G   NN
Sbjct: 549 MIQRSLERKNMSTPSQCSSCFEQYCWNGTTVNN 581


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 623 FQLFCCGPHHFISFR 667
           F L CC P  F+ FR
Sbjct: 506 FTLLCCSPERFLQFR 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,575
Number of Sequences: 5004
Number of extensions: 64786
Number of successful extensions: 195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)