Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14a18
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0203 + 16365262-16365644,16365774-16365869,16365991-163662... 32 0.44
06_01_0232 + 1779568-1779846 31 0.76
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 31 0.76
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 31 1.0
05_04_0040 + 17429281-17429371,17429433-17430150,17431387-174314... 30 1.8
11_04_0407 + 17335773-17335777,17335930-17336635,17336844-173375... 30 2.3
08_02_0717 + 20372728-20372836,20372936-20373078,20374131-203742... 30 2.3
04_04_0819 - 28312667-28313219,28315157-28316430 30 2.3
04_03_0298 + 14080353-14080927,14081041-14081554 30 2.3
04_03_0293 - 14001443-14001956,14002070-14002644 30 2.3
05_03_0468 + 14376926-14377183,14377534-14377710,14377802-143778... 29 3.1
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 29 4.1
08_02_0766 - 20993207-20993307,20993510-20993612,20993686-209937... 28 7.1
03_01_0380 + 2955102-2955357,2955468-2956189 28 7.1
07_03_0289 - 16293461-16293760,16295154-16295900 28 9.4
>02_03_0203 +
16365262-16365644,16365774-16365869,16365991-16366297,
16366417-16366664,16367201-16367438
Length = 423
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 624 SSCSVVGPTTSS-PLGHSPA-FLVSTC*VVPAAPASISWRR 740
SSC+ VG T+S P H A F+VS PA+PA++ WRR
Sbjct: 14 SSCAAVGVATASHPHRHRQARFVVSP--PAPASPAALLWRR 52
>06_01_0232 + 1779568-1779846
Length = 92
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = -1
Query: 730 EIDAGAAGTTQHVETRKAGECPKGDEVVGPTTEQLEPSRGAVVDIKHDVDRILAQHSYA 554
++ A AAGT+ K G VVGP PS A D R L Q +Y+
Sbjct: 19 DVFAYAAGTSLTAAVNKVSTASPGGRVVGPAVSAAAPSSEAKKDAAGKAPRRLLQAAYS 77
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 319 PTSETGSSARASSCRTPT*SLNYRSSPNQS 408
P + G A SC +PT SL + SPN+S
Sbjct: 12 PPEQVGDGVEARSCASPTPSLRRKGSPNRS 41
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 31.1 bits (67), Expect = 1.0
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = -1
Query: 589 DVDRILAQHSYAHPYTHAADLLEIKEENNDKGDIFYASCDEDNDCVTIELPCEEEIPVQT 410
D DR+ A HS HP +A +E+ + +I + S DE D ++ P + I
Sbjct: 2641 DADRLPAPHSRDHPM--SAIPIELDTFGGEGNEIHF-SVDELTDSSVLQAPADRTIQTSP 2697
Query: 409 EIDSVKNDSSAITLECDMKMLSPMTLS-PKSVEDNLLLSPAHTNLS 275
V + S ++ M +++S K ++LLLS LS
Sbjct: 2698 SSIHVLDASESVDFHGSMTEQRTVSISASKRAINSLLLSRLIEELS 2743
>05_04_0040 +
17429281-17429371,17429433-17430150,17431387-17431435,
17431540-17431785,17432266-17432673
Length = 503
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = -1
Query: 727 IDAGAAGTTQHVETRKAGECPKGDEVVGPTTEQLEPSRGAVVDIKHDVDRILAQHSYAHP 548
++A AG H+E + + E L+P G + D DV++ SYAH
Sbjct: 63 VEAVDAGVVAHLEQPSTPQPTSSPSIAESCKEHLKPMVGMIFDTLTDVEKF--YKSYAHE 120
Query: 547 YTHAADLLEIKEENND 500
+ + + K++N +
Sbjct: 121 AGFSVRVGQHKKQNEE 136
>11_04_0407 +
17335773-17335777,17335930-17336635,17336844-17337542,
17340710-17340724,17341479-17342126
Length = 690
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/91 (26%), Positives = 37/91 (40%)
Frame = -1
Query: 664 KGDEVVGPTTEQLEPSRGAVVDIKHDVDRILAQHSYAHPYTHAADLLEIKEENNDKGDIF 485
KG++V T+ L + +I ++ QH Y H YTH L E + N ++F
Sbjct: 426 KGEQVFDGLTKLLTAPNTTIREIAAEI----LQHVYFHDYTHRLSLTEKEASTNLVAELF 481
Query: 484 YASCDEDNDCVTIELPCEEEIPVQTEIDSVK 392
+ + L I V+ E D VK
Sbjct: 482 RTNSQMGTQAQSGAL----AITVEAEHDGVK 508
>08_02_0717 +
20372728-20372836,20372936-20373078,20374131-20374211,
20374307-20374510,20374789-20374796,20375153-20375245,
20375377-20375500,20375585-20375650,20375841-20375907,
20376600-20376676,20377032-20377145,20377546-20377623,
20377705-20377856,20377960-20378020,20378292-20378398,
20378497-20378562,20379099-20379177,20379671-20379967
Length = 641
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 609 APRLGSSCSVVGPTTSSPLGHSPA 680
AP LG VV P T SP+G PA
Sbjct: 18 APALGRRLPVVNPATESPIGEIPA 41
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 29.9 bits (64), Expect = 2.3
Identities = 29/75 (38%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 472 HSLRRICRLYRCSPL*F-REGLLRVCRDEHKSVVPVSCRRHA*CLLQHLDWVPVVLLWAP 648
H+LR + R C PL R+GL R RD + S V H + LD VL P
Sbjct: 498 HALR-LSRGEPCLPLRIARQGLSR--RDTYTSESLVVLEAHEAAVPACLDKTEAVLSTDP 554
Query: 649 PLHLL*GTLQLS-WF 690
PL GTLQ+ WF
Sbjct: 555 PLTDFQGTLQIDVWF 569
>04_03_0298 + 14080353-14080927,14081041-14081554
Length = 362
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 598 IKHDVDRILAQHSYAHPYTHAADLLEIKEENNDK 497
+K +R+ HS H Y HA DLL+ DK
Sbjct: 39 VKSQNERVKYLHSVNHAYNHAVDLLDDGSATRDK 72
>04_03_0293 - 14001443-14001956,14002070-14002644
Length = 362
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 598 IKHDVDRILAQHSYAHPYTHAADLLEIKEENNDK 497
+K +R+ HS H Y HA DLL+ DK
Sbjct: 39 VKSQNERVKYLHSVNHAYNHAVDLLDDGSATRDK 72
>05_03_0468 +
14376926-14377183,14377534-14377710,14377802-14377867,
14378009-14378134,14378499-14378678,14379015-14379179,
14380185-14380538
Length = 441
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 618 LGSSCSVVGPTTSSPLGHSPAFLV-STC*VVPAAPASIS 731
LG S + P T+S S + +V TC VVPA+P S+S
Sbjct: 397 LGRSVTPATPKTASSSPSSTSIVVPETCPVVPASPKSLS 435
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 557 IRVLCQYPVDVMLDVYYSTSTGFQLFCCG-PHHFISFRALSSFPG 688
+RVL PV+ MLD + T +L G P+ F+ A++ F G
Sbjct: 129 VRVLGSLPVNTMLDTLHQTGRDARLIGQGNPNDFLVSAAVAEFKG 173
>08_02_0766 -
20993207-20993307,20993510-20993612,20993686-20993730,
20993848-20993916,20994463-20994510,20995357-20995404,
20995492-20995551,20996063-20996119,20996403-20996471,
20996511-20996603
Length = 230
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 241 AVTITTRSLSQSSGWCAPETRANYLPPTSETGSSARAS 354
++T+ T +LS S GW AP AN+ +E+ S ++A+
Sbjct: 91 SLTVMT-ALSVSLGWVAPNLDANFKSNKAESKSKSKAN 127
>03_01_0380 + 2955102-2955357,2955468-2956189
Length = 325
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = -1
Query: 514 EENNDKGDIFYASCDEDNDCVTIELPCEEEIPVQTEIDSVKN-DSSAITLECDMKMLSPM 338
+ N K I S DED + ++ ELP EI EI +V N +S + + L+ +
Sbjct: 215 DSNLKKVRIALDSDDEDENILSYELPAISEIS-SVEIGNVSNVNSLSAAADYLSAPLNVL 273
Query: 337 TLSPKSVEDNLLLSPAHTNLS 275
T + K VE+ + + +++
Sbjct: 274 TSAAKEVEEPICIDAIDVDMN 294
>07_03_0289 - 16293461-16293760,16295154-16295900
Length = 348
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -1
Query: 607 VVDIKHDVDRILAQHSYAHPYTHAADLLEIKEENNDKGDIFYASCDEDNDCVTIELPCEE 428
V+D+ H +D I H + A D+++ + + F D DCV I C+E
Sbjct: 211 VLDLPHVIDSIPVDHGDVVQFV-AGDMMDFIPQADALLLKFVLHDWSDEDCVKILKRCKE 269
Query: 427 EIP 419
IP
Sbjct: 270 AIP 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,393,912
Number of Sequences: 37544
Number of extensions: 443351
Number of successful extensions: 1302
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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