Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14a18
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    29   2.7  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    29   2.7  
Z68319-3|CAA92701.1|  339|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric chr...    29   3.6  
AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like p...    29   3.6  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z50796-1|CAA90668.1|  490|Caenorhabditis elegans Hypothetical pr...    28   6.3  
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z50029-1|CAA90340.2|  460|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical ...    28   8.4  
AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 412 TEIDSVKNDSSAITLECDMKMLSPMTLS 329
           T I S++ DSS + L+ D+  LSP+ LS
Sbjct: 562 TRIQSIRMDSSKLCLDADLCGLSPLVLS 589


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9a protein.
          Length = 1019

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 412 TEIDSVKNDSSAITLECDMKMLSPMTLS 329
           T I S++ DSS + L+ D+  LSP+ LS
Sbjct: 673 TRIQSIRMDSSKLCLDADLCGLSPLVLS 700


>Z68319-3|CAA92701.1|  339|Caenorhabditis elegans Hypothetical
           protein T23G7.3 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
 Frame = -1

Query: 634 EQLEPSRGAVVD-IKHDV-DRILAQHSYAHPYTHAADLLEIKEENNDKGDIFYASCDEDN 461
           EQ E  + A  + I  ++  + + +  +   +T A D     + +  KG + Y     DN
Sbjct: 102 EQTEEEKNAAAEKISIELKSKSIRRRIHYQKFTRAKDTSNYSDSHK-KGILGYGRLKSDN 160

Query: 460 DCVTIELPCEEEIPVQTEIDSVKNDSSAITLECDMKMLSPMTLSPKSVED 311
                    EE+I  +TE  SVK+DSS    +   K     T+S  SV D
Sbjct: 161 --------AEEKIEEKTENSSVKSDSSDSQADSQEKKEGNNTVSTLSVGD 202


>U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 130 GGNFFQNYAPRLRPVQGIAPTRIPTKDLATPLNQIH*AVTITTRSLSQSSGWCAPETRAN 309
           G NFF++   ++RPV    P    T  L+T  N+     TI   S+++     A    ++
Sbjct: 434 GANFFKHPRKKIRPVVQTPPRIKATSRLSTESNKER---TIEMESVAEERTMEADSIGSS 490

Query: 310 YLPPT 324
           Y+ PT
Sbjct: 491 YISPT 495


>AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like
           protein HCP-4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 130 GGNFFQNYAPRLRPVQGIAPTRIPTKDLATPLNQIH*AVTITTRSLSQSSGWCAPETRAN 309
           G NFF++   ++RPV    P    T  L+T  N+     TI   S+++     A    ++
Sbjct: 434 GANFFKHPRKKIRPVVQTPPRIKATSRLSTESNKER---TIEMESVAEERTMEADSIGSS 490

Query: 310 YLPPT 324
           Y+ PT
Sbjct: 491 YISPT 495


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -2

Query: 720 QVLQERLNMSKPGKLESALKEMKWWGPQQNNWNPVEVL**TSSMTSTGYWHNTLMLIPTH 541
           + + E +NM     L+S  ++ +  G   +N  P+E+L    S TS   W N + L+ T 
Sbjct: 202 KAIDEEVNMY----LQSESRDARIMGLHDDNSQPIEILTRILSKTSDQQWENFIGLLETI 257

Query: 540 TQQT 529
            + T
Sbjct: 258 EKST 261


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 567 NTLMLIPTHTQQTFSKSKRRTTIKATYSTQAVTKIMIASR*N 442
           NT+   P  T  T + +KR TT KAT  T   T  +I  R N
Sbjct: 281 NTVTKPPRRTTTTRTTTKRLTTTKATLKTTTKTLPVIPPRPN 322


>Z50796-1|CAA90668.1|  490|Caenorhabditis elegans Hypothetical
           protein T05A6.4 protein.
          Length = 490

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 286 CAPETRANYLPPTSETGSSARASSCRTPT*SLNYRSSPNQSLSEL 420
           C PE   NY   TSET +    S C      L + S  + S+S+L
Sbjct: 38  CEPECTFNYSEVTSETINFLPGSECGIVCGILTFNSRTDLSISQL 82


>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
            C50C3.2 protein.
          Length = 2107

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 597  SSMTSTGYWHNTLMLIPTHTQQTFSKSKRRTTIKATYSTQAVTKIMIAS 451
            S+  +T Y H+T+  + T+T+ TF K K     K   ST A  K+ + S
Sbjct: 1673 SNFENTAY-HSTMTFVETYTKDTFEKLK-VVCRKLQNSTDAEKKLSLVS 1719


>AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical
           protein K02F6.1 protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 757 HELANSLLQEIDAGAAGTTQHVETRKAG-ECPKGDEVVGP--TTEQLEPSRGAVVD 599
           H L  S  +++  G+A  T HV TR+ G +   G +   P   +  L   RG VVD
Sbjct: 726 HSLRQSHPRQVVRGSAPNTDHVSTRRRGRDTASGRDAPSPGIISGFLSYKRGDVVD 781


>Z50029-1|CAA90340.2|  460|Caenorhabditis elegans Hypothetical
           protein ZC504.1 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +2

Query: 584 DVMLDVYYSTSTGFQLFCCGPHHFISFRALSSFPGFDMLSRSCSTCINFLEEGVC 748
           DV    Y  T+ G   FCC PH  I        P   ++S++   C N LE   C
Sbjct: 131 DVCPADYVCTTQGLHSFCCSPHDAIC--PAGQQPYVHIVSKNSMKC-NPLETSSC 182


>AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4b protein.
          Length = 833

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 681 KLESALKEMKWWGPQQNNWNPVEVL**TSSMTSTGYWHNTLML 553
           ++ESA  E+ WW  +QN      ++  T    +  +W  TL++
Sbjct: 655 RIESA--ELLWWAQEQNEKKSKNLVNFTEQFNNLSFWVRTLII 695


>AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4a protein.
          Length = 877

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 681 KLESALKEMKWWGPQQNNWNPVEVL**TSSMTSTGYWHNTLML 553
           ++ESA  E+ WW  +QN      ++  T    +  +W  TL++
Sbjct: 655 RIESA--ELLWWAQEQNEKKSKNLVNFTEQFNNLSFWVRTLII 695


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,129,593
Number of Sequences: 27780
Number of extensions: 379934
Number of successful extensions: 1306
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)